Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1T0X entry

There are 9 chains in PDB entry 1T0X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	G 1	T 49
E	A 1	C 49
F	G 1	U 8
K	MET 1	GLN 229
L	MET 1	GLN 229
M	MET 1	ARG 1119
N	LYS 2	ALA 1505
O	ALA 2	GLU 96
P	LYS 74	ASP 423

There are120 helices in PDB entry 1T0X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	K	31	47	Right-handed alpha
Helix 2	2	K	74	85	Right-handed alpha
Helix 3	3	K	110	114	Right-handed 310
Helix 4	4	K	152	157	Right-handed alpha
Helix 5	5	K	206	223	Right-handed alpha
Helix 6	6	L	31	47	Right-handed alpha
Helix 7	7	L	74	85	Right-handed alpha
Helix 8	8	L	110	114	Right-handed 310
Helix 9	9	L	152	157	Right-handed alpha
Helix 10	10	L	206	224	Right-handed alpha
Helix 11	11	M	19	30	Right-handed alpha
Helix 12	12	M	42	52	Right-handed alpha
Helix 13	13	M	79	86	Right-handed alpha
Helix 14	14	M	192	201	Right-handed alpha
Helix 15	15	M	203	212	Right-handed alpha
Helix 16	16	M	215	221	Right-handed 310
Helix 17	17	M	224	229	Right-handed alpha
Helix 18	18	M	230	242	Right-handed alpha
Helix 19	19	M	252	258	Right-handed alpha
Helix 20	20	M	273	281	Right-handed alpha
Helix 21	21	M	302	314	Right-handed alpha
Helix 22	22	M	335	362	Right-handed alpha
Helix 23	23	M	375	388	Right-handed alpha
Helix 24	24	M	399	408	Right-handed alpha
Helix 25	25	M	487	493	Right-handed alpha
Helix 26	26	M	535	540	Right-handed 310
Helix 27	27	M	549	553	Right-handed 310
Helix 28	28	M	554	566	Right-handed alpha
Helix 29	29	M	583	591	Right-handed alpha
Helix 30	30	M	692	697	Right-handed alpha
Helix 31	31	M	734	738	Right-handed 310
Helix 32	32	M	768	780	Right-handed alpha
Helix 33	33	M	882	897	Right-handed alpha
Helix 34	34	M	910	932	Right-handed alpha
Helix 35	35	M	937	949	Right-handed alpha
Helix 36	36	M	958	969	Right-handed alpha
Helix 37	37	M	1000	1004	Right-handed 310
Helix 38	38	M	1033	1043	Right-handed alpha
Helix 39	39	M	1045	1054	Right-handed alpha
Helix 40	40	M	1059	1073	Right-handed alpha
Helix 41	41	M	1082	1095	Right-handed alpha
Helix 42	42	N	14	21	Right-handed alpha
Helix 43	43	N	46	51	Right-handed alpha
Helix 44	44	N	83	89	Right-handed alpha
Helix 45	45	N	102	105	Right-handed 310
Helix 46	46	N	110	116	Right-handed alpha
Helix 47	47	N	121	129	Right-handed alpha
Helix 48	48	N	154	163	Right-handed alpha
Helix 49	49	N	176	182	Right-handed alpha
Helix 50	50	N	183	186	Right-handed 310
Helix 51	51	N	233	238	Right-handed alpha
Helix 52	52	N	457	467	Right-handed alpha
Helix 53	53	N	469	483	Right-handed alpha
Helix 54	54	N	485	504	Right-handed alpha
Helix 55	55	N	508	511	Right-handed 310
Helix 56	56	N	539	560	Right-handed alpha
Helix 57	57	N	563	583	Right-handed alpha
Helix 58	58	N	602	609	Right-handed alpha
Helix 59	59	N	612	618	Right-handed alpha
Helix 60	60	N	645	653	Right-handed alpha
Helix 61	61	N	653	664	Right-handed alpha
Helix 62	62	N	669	679	Right-handed alpha
Helix 63	63	N	680	683	Right-handed 310
Helix 64	64	N	684	684	Right-handed 310
Helix 65	65	N	685	696	Right-handed alpha
Helix 66	66	N	709	711	Right-handed 310
Helix 67	67	N	730	734	Right-handed 310
Helix 68	68	N	752	763	Right-handed alpha
Helix 69	69	N	764	768	Right-handed 310
Helix 70	70	N	783	793	Right-handed alpha
Helix 71	71	N	810	822	Right-handed alpha
Helix 72	72	N	835	841	Right-handed alpha
Helix 73	73	N	845	855	Right-handed alpha
Helix 74	74	N	876	890	Right-handed alpha
Helix 75	75	N	892	899	Right-handed alpha
Helix 76	76	N	907	922	Right-handed alpha
Helix 77	77	N	923	946	Right-handed alpha
Helix 78	78	N	950	954	Right-handed 310
Helix 79	79	N	958	980	Right-handed alpha
Helix 80	80	N	984	1014	Right-handed alpha
Helix 81	81	N	1018	1026	Right-handed alpha
Helix 82	82	N	1031	1039	Right-handed alpha
Helix 83	83	N	1066	1101	Right-handed alpha
Helix 84	84	N	1136	1145	Right-handed alpha
Helix 85	85	N	1167	1181	Right-handed alpha
Helix 86	86	N	1190	1194	Right-handed 310
Helix 87	87	N	1201	1206	Right-handed alpha
Helix 88	88	N	1220	1234	Right-handed alpha
Helix 89	89	N	1254	1264	Right-handed alpha
Helix 90	90	N	1331	1340	Right-handed alpha
Helix 91	91	N	1340	1358	Right-handed alpha
Helix 92	92	N	1364	1376	Right-handed alpha
Helix 93	93	N	1395	1408	Right-handed alpha
Helix 94	94	N	1423	1430	Right-handed alpha
Helix 95	95	N	1433	1438	Right-handed alpha
Helix 96	96	N	1442	1454	Right-handed alpha
Helix 97	97	N	1461	1468	Right-handed alpha
Helix 98	98	N	1489	1501	Right-handed alpha
Helix 99	99	O	5	12	Right-handed alpha
Helix 100	100	O	15	30	Right-handed alpha
Helix 101	101	O	52	56	Right-handed 310
Helix 102	102	O	60	69	Right-handed alpha
Helix 103	103	O	81	93	Right-handed alpha
Helix 104	104	P	77	91	Right-handed alpha
Helix 105	105	P	96	121	Right-handed alpha
Helix 106	106	P	123	137	Right-handed alpha
Helix 107	107	P	138	144	Right-handed alpha
Helix 108	108	P	153	166	Right-handed alpha
Helix 109	109	P	167	191	Right-handed alpha
Helix 110	110	P	191	200	Right-handed alpha
Helix 111	111	P	201	206	Right-handed 310
Helix 112	112	P	208	227	Right-handed alpha
Helix 113	113	P	234	255	Right-handed alpha
Helix 114	114	P	261	279	Right-handed alpha
Helix 115	115	P	287	296	Right-handed alpha
Helix 116	116	P	300	312	Right-handed alpha
Helix 117	117	P	328	333	Right-handed 310
Helix 118	118	P	341	359	Right-handed alpha
Helix 119	119	P	362	375	Right-handed alpha
Helix 120	120	P	393	415	Right-handed alpha

There are 40 sheets in PDB entry 1T0X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	20	28	anti-parallel
Strand 3	K	193	201	anti-parallel
Strand 4	K	174	183	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	96	103	first strand
Strand 2	K	138	147	anti-parallel
Strand 3	K	50	58	anti-parallel
Strand 4	K	165	166	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	87	89	first strand
Strand 2	K	120	122	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	150	151	first strand
Strand 2	K	169	170	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	21	28	anti-parallel
Strand 3	L	193	201	anti-parallel
Strand 4	L	174	183	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	103	first strand
Strand 2	L	138	148	anti-parallel
Strand 3	L	49	58	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	87	89	first strand
Strand 2	L	120	122	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	151	first strand
Strand 2	L	169	170	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	5	first strand
Strand 2	M	899	902	parallel
Strand 3	M	579	580	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	72	first strand
Strand 2	M	95	100	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	91	92	first strand
Strand 2	M	118	119	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	127	128	first strand
Strand 2	M	133	136	anti-parallel
Strand 3	M	392	394	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	331	333	first strand
Strand 2	M	138	142	anti-parallel
Strand 3	M	410	411	parallel
Strand 4	M	452	453	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	146	147	first strand
Strand 2	M	161	162	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	173	177	first strand
Strand 2	M	181	185	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	460	461	first strand
Strand 2	M	467	468	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	471	473	first strand
Strand 2	M	531	533	anti-parallel
Strand 3	M	496	497	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	513	516	first strand
Strand 2	M	521	524	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	601	603	first strand
Strand 2	M	613	615	anti-parallel
Strand 3	M	619	621	anti-parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	971	972	first strand
Strand 2	M	987	996	anti-parallel
Strand 3	M	838	840	anti-parallel
Strand 4	M	846	853	anti-parallel
Strand 5	M	687	691	parallel
Strand 6	M	869	871	anti-parallel
Strand 7	M	669	675	parallel
Strand 8	M	987	996	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	702	713	first strand
Strand 2	M	819	831	anti-parallel
Strand 3	M	799	806	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	754	756	first strand
Strand 2	M	790	791	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	759	760	first strand
Strand 2	M	786	787	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1006	1008	first strand
Strand 2	N	626	633	anti-parallel
Strand 3	N	744	748	anti-parallel
Strand 4	N	700	703	anti-parallel
Strand 5	N	713	718	anti-parallel
Strand 6	N	641	642	parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1006	1008	first strand
Strand 2	N	626	633	anti-parallel
Strand 3	N	726	728	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1030	1032	first strand
Strand 2	N	621	623	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1098	1102	first strand
Strand 2	N	7	11	anti-parallel
Strand 3	N	1455	1458	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	25	first strand
Strand 2	N	90	100	parallel
Strand 3	N	513	519	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	134	135	first strand
Strand 2	N	454	455	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	167	168	first strand
Strand 2	N	391	394	anti-parallel
Strand 3	N	211	213	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	195	196	first strand
Strand 2	N	204	205	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	397	399	first strand
Strand 2	N	443	447	anti-parallel
Strand 3	N	434	438	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	527	529	first strand
Strand 2	N	535	537	anti-parallel
Strand 3	P	315	316	parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	842	843	first strand
Strand 2	N	865	868	parallel
Strand 3	N	871	873	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1118	1119	first strand
Strand 2	N	1187	1188	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1123	1124	first strand
Strand 2	N	1133	1134	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1153	1154	first strand
Strand 2	N	1159	1160	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1300	1303	first strand
Strand 2	N	1292	1295	anti-parallel
Strand 3	N	1279	1283	anti-parallel
Strand 4	N	1318	1319	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1393	1394	first strand
Strand 2	N	1378	1381	anti-parallel
Strand 3	N	1417	1419	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1485	1488	first strand
Strand 2	O	73	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1T0X

Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0X