Analysis of interatomic Contacts of Structural Units in PDB entry:
1T11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T11 entry

There are 2 chains in PDB entry 1T11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TYR 378
B
 HIS 0ALA 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1T11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 37Right-handed alpha
Helix 2
2
A
50 51Right-handed 310
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
57 57Right-handed 310
Helix 5
5
A
58 82Right-handed alpha
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
198 202Right-handed 310
Helix 8
8
A
250 257Right-handed 310
Helix 9
9
A
261 288Right-handed alpha
Helix 10
10
A
303 322Right-handed alpha
Helix 11
11
A
325 330Right-handed alpha
Helix 12
12
A
331 332Right-handed 310
Helix 13
13
A
333 336Right-handed 310
Helix 14
14
A
337 358Right-handed alpha
Helix 15
15
A
363 377Right-handed alpha
Helix 16
16
B
20 39Right-handed alpha
Helix 17
17
B
50 82Right-handed alpha
Helix 18
18
B
137 148Right-handed alpha
Helix 19
19
B
198 202Right-handed 310
Helix 20
20
B
249 253Right-handed 310
Helix 21
21
B
258 288Right-handed alpha
Helix 22
22
B
303 321Right-handed alpha
Helix 23
23
B
325 332Right-handed alpha
Helix 24
24
B
334 358Right-handed alpha
Helix 25
25
B
363 376Right-handed alpha
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There are 8 sheets in PDB entry 1T11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
91 96anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
300 302parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
163 171anti-parallel
Strand 4
A
181 188anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
163 171anti-parallel
Strand 4
A
230 233anti-parallel
Strand 5
A
213 216anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
91 96anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
300 302parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
230 244anti-parallel
Strand 3
B
163 171anti-parallel
Strand 4
B
181 188anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
230 244anti-parallel
Strand 3
B
210 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il