Analysis of interatomic Contacts of Structural Units in PDB entry:
1T13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T13 entry

There are 5 chains in PDB entry 1T13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10LEU 156
B
 SER 12ALA 155
C
 SER 12ALA 155
D
 THR 11ALA 155
E
 THR 11ALA 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1T13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 42Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
58 69Right-handed alpha
Helix 4
4
A
89 108Right-handed alpha
Helix 5
5
A
121 152Right-handed alpha
Helix 6
6
B
23 42Right-handed alpha
Helix 7
7
B
55 57Right-handed 310
Helix 8
8
B
58 68Right-handed alpha
Helix 9
9
B
89 108Right-handed alpha
Helix 10
10
B
121 155Right-handed alpha
Helix 11
11
C
23 43Right-handed alpha
Helix 12
12
C
55 57Right-handed 310
Helix 13
13
C
58 70Right-handed alpha
Helix 14
14
C
89 108Right-handed alpha
Helix 15
15
C
121 153Right-handed alpha
Helix 16
16
D
23 43Right-handed alpha
Helix 17
17
D
55 57Right-handed 310
Helix 18
18
D
58 69Right-handed alpha
Helix 19
19
D
89 108Right-handed alpha
Helix 20
20
D
121 154Right-handed alpha
Helix 21
21
E
23 43Right-handed alpha
Helix 22
22
E
55 57Right-handed 310
Helix 23
23
E
58 69Right-handed alpha
Helix 24
24
E
89 108Right-handed alpha
Helix 25
25
E
121 155Right-handed alpha
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There are 5 sheets in PDB entry 1T13. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 53first strand
Strand 2
A
13 20parallel
Strand 3
A
74 80parallel
Strand 4
A
111 116parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 53first strand
Strand 2
B
14 20parallel
Strand 3
B
74 80parallel
Strand 4
B
111 116parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 53first strand
Strand 2
C
14 20parallel
Strand 3
C
74 80parallel
Strand 4
C
111 116parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 53first strand
Strand 2
D
13 20parallel
Strand 3
D
74 80parallel
Strand 4
D
111 116parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 53first strand
Strand 2
E
14 20parallel
Strand 3
E
74 80parallel
Strand 4
E
111 116parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il