Analysis of interatomic Contacts of Structural Units in PDB entry:
1T1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T1E entry

There is 1 chain in PDB entry 1T1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12PRO 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1T1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 62Right-handed alpha
Helix 2
2
A
73 82Right-handed alpha
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
A
118 126Right-handed alpha
Helix 5
5
A
152 154Right-handed 310
Helix 6
6
A
196 204Right-handed alpha
Helix 7
7
A
227 239Right-handed alpha
Helix 8
8
A
263 279Right-handed alpha
Helix 9
9
A
292 305Right-handed alpha
Helix 10
10
A
323 325Right-handed 310
Helix 11
11
A
326 343Right-handed alpha
Helix 12
12
A
354 358Right-handed 310
Helix 13
13
A
399 404Right-handed alpha
Helix 14
14
A
447 451Right-handed 310
Helix 15
15
A
465 467Right-handed 310
Helix 16
16
A
468 485Right-handed alpha
Helix 17
17
A
491 496Right-handed alpha
Helix 18
18
A
497 498Right-handed 310
Helix 19
19
A
499 501Right-handed 310
Helix 20
20
A
536 545Right-handed alpha
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There are 9 sheets in PDB entry 1T1E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
147 149anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
139 141anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
156 160anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
368 369anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
459 464anti-parallel
Strand 3
A
452 456anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
283 288parallel
Strand 3
A
216 221parallel
Strand 4
A
313 316parallel
Strand 5
A
346 350parallel
Strand 6
A
377 387parallel
Strand 7
A
390 396anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
283 288parallel
Strand 3
A
216 221parallel
Strand 4
A
313 316parallel
Strand 5
A
346 350parallel
Strand 6
A
377 387parallel
Strand 7
A
442 445parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
438 439anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
534 535anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il