Analysis of interatomic Contacts of Structural Units in PDB entry:
1T1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T1R entry

There are 2 chains in PDB entry 1T1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 397
B
 GLY 0SER 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 1T1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
57 71Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
105 115Right-handed alpha
Helix 6
6
A
124 142Right-handed alpha
Helix 7
7
A
149 158Right-handed alpha
Helix 8
8
A
160 165Right-handed alpha
Helix 9
9
A
193 200Right-handed 310
Helix 10
10
A
201 206Right-handed alpha
Helix 11
11
A
214 223Right-handed alpha
Helix 12
12
A
224 239Right-handed alpha
Helix 13
13
A
241 243Right-handed 310
Helix 14
14
A
275 285Right-handed alpha
Helix 15
15
A
314 326Right-handed alpha
Helix 16
16
A
327 347Right-handed alpha
Helix 17
17
A
353 366Right-handed alpha
Helix 18
18
A
373 396Right-handed alpha
Helix 19
19
B
10 23Right-handed alpha
Helix 20
20
B
37 49Right-handed alpha
Helix 21
21
B
57 71Right-handed alpha
Helix 22
22
B
80 88Right-handed alpha
Helix 23
23
B
102 104Right-handed 310
Helix 24
24
B
105 115Right-handed alpha
Helix 25
25
B
124 142Right-handed alpha
Helix 26
26
B
149 159Right-handed alpha
Helix 27
27
B
160 165Right-handed alpha
Helix 28
28
B
172 175Right-handed 310
Helix 29
29
B
193 200Right-handed 310
Helix 30
30
B
201 206Right-handed alpha
Helix 31
31
B
214 223Right-handed alpha
Helix 32
32
B
224 238Right-handed alpha
Helix 33
33
B
241 243Right-handed 310
Helix 34
34
B
275 285Right-handed alpha
Helix 35
35
B
297 301Right-handed 310
Helix 36
36
B
314 327Right-handed alpha
Helix 37
37
B
327 347Right-handed alpha
Helix 38
38
B
353 367Right-handed alpha
Helix 39
39
B
373 397Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1T1R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
52 55parallel
Strand 3
A
27 33parallel
Strand 4
A
1 6parallel
Strand 5
A
95 98parallel
Strand 6
A
118 121parallel
Strand 7
A
144 147parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
177 184parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
266 270anti-parallel
Strand 5
B
266 270anti-parallel
Strand 6
B
255 261anti-parallel
Strand 7
B
177 184anti-parallel
Strand 8
B
245 249parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
52 55parallel
Strand 3
B
27 33parallel
Strand 4
B
1 6parallel
Strand 5
B
95 98parallel
Strand 6
B
118 121parallel
Strand 7
B
145 147parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il