Analysis of interatomic Contacts of Structural Units in PDB entry:
1T2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T2D entry

There is 1 chain in PDB entry 1T2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1T2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
38 49Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
65 70Right-handed 310
Helix 5
5
A
93 96Right-handed 310
Helix 6
6
A
97 116Right-handed alpha
Helix 7
7
A
127 140Right-handed alpha
Helix 8
8
A
142 144Right-handed 310
Helix 9
9
A
150 167Right-handed alpha
Helix 10
10
A
169 171Right-handed 310
Helix 11
11
A
189 191Right-handed 310
Helix 12
12
A
199 205Right-handed alpha
Helix 13
13
A
209 222Right-handed alpha
Helix 14
14
A
222 231Right-handed alpha
Helix 15
15
A
235 251Right-handed alpha
Helix 16
16
A
266 268Right-handed 310
Helix 17
17
A
294 315Right-handed alpha
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There are 4 sheets in PDB entry 1T2D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
29 33parallel
Strand 3
A
5 9parallel
Strand 4
A
74 77parallel
Strand 5
A
120 123parallel
Strand 6
A
146 148parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
193 194anti-parallel
Strand 3
A
197 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
186 187anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 264first strand
Strand 2
A
270 281anti-parallel
Strand 3
A
284 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il