Analysis of interatomic Contacts of Structural Units in PDB entry:
1T39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T39 entry

There are 8 chains in PDB entry 1T39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 G 6
C
 C 8 A 13
D
 T 14 C 26
E
 G 1 G 6
E
 C 8 A 13
F
 T 14 C 26
A
 CYS 5ARG 175
B
 MET 7HIS 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1T39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 72Right-handed alpha
Helix 2
2
A
73 79Right-handed 310
Helix 3
3
A
86 91Right-handed alpha
Helix 4
4
A
93 105Right-handed alpha
Helix 5
5
A
114 121Right-handed alpha
Helix 6
6
A
127 136Right-handed alpha
Helix 7
7
A
161 174Right-handed alpha
Helix 8
8
B
56 72Right-handed alpha
Helix 9
9
B
73 79Right-handed 310
Helix 10
10
B
86 91Right-handed alpha
Helix 11
11
B
93 105Right-handed alpha
Helix 12
12
B
114 121Right-handed alpha
Helix 13
13
B
126 136Right-handed alpha
Helix 14
14
B
161 174Right-handed alpha
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There are 6 sheets in PDB entry 1T39. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
27 28anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
17 18anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
148 149parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
17 18anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
148 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il