Analysis of interatomic Contacts of Structural Units in PDB entry:
1T43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T43 entry

There is 1 chain in PDB entry 1T43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2TYR 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1T43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
35 42Right-handed alpha
Helix 4
4
A
48 65Right-handed alpha
Helix 5
5
A
67 73Right-handed alpha
Helix 6
6
A
96 104Right-handed alpha
Helix 7
7
A
121 131Right-handed alpha
Helix 8
8
A
142 156Right-handed alpha
Helix 9
9
A
191 202Right-handed 310
Helix 10
10
A
203 208Right-handed alpha
Helix 11
11
A
214 226Right-handed alpha
Helix 12
12
A
239 241Right-handed 310
Helix 13
13
A
242 254Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1T43. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
136 140parallel
Strand 3
A
113 116parallel
Strand 4
A
179 182parallel
Strand 5
A
233 237parallel
Strand 6
A
268 274anti-parallel
Strand 7
A
259 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il