Analysis of interatomic Contacts of Structural Units in PDB entry:
1T47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T47 entry

There are 2 chains in PDB entry 1T47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 16LYS 377
B
 ASP 16LYS 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1T47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
83 97Right-handed alpha
Helix 4
4
A
109 120Right-handed alpha
Helix 5
5
A
196 209Right-handed alpha
Helix 6
6
A
218 223Right-handed alpha
Helix 7
7
A
254 264Right-handed alpha
Helix 8
8
A
277 288Right-handed alpha
Helix 9
9
A
296 300Right-handed 310
Helix 10
10
A
302 308Right-handed alpha
Helix 11
11
A
313 321Right-handed alpha
Helix 12
12
A
362 377Right-handed alpha
Helix 13
13
B
32 43Right-handed alpha
Helix 14
14
B
53 57Right-handed 310
Helix 15
15
B
83 97Right-handed alpha
Helix 16
16
B
109 120Right-handed alpha
Helix 17
17
B
196 208Right-handed alpha
Helix 18
18
B
218 225Right-handed alpha
Helix 19
19
B
254 264Right-handed alpha
Helix 20
20
B
277 288Right-handed alpha
Helix 21
21
B
297 302Right-handed alpha
Helix 22
22
B
303 308Right-handed alpha
Helix 23
23
B
313 321Right-handed alpha
Helix 24
24
B
362 375Right-handed alpha
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There are 4 sheets in PDB entry 1T47. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 133first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
150 159anti-parallel
Strand 4
A
99 106parallel
Strand 5
A
22 29anti-parallel
Strand 6
A
71 78parallel
Strand 7
A
61 68anti-parallel
Strand 8
A
47 52anti-parallel
Strand 9
A
168 169anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
228 234anti-parallel
Strand 3
A
241 247anti-parallel
Strand 4
A
184 191parallel
Strand 5
A
267 274anti-parallel
Strand 6
A
347 353parallel
Strand 7
A
331 336anti-parallel
Strand 8
A
323 326anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 133first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
99 106parallel
Strand 5
B
22 29anti-parallel
Strand 6
B
71 78parallel
Strand 7
B
61 68anti-parallel
Strand 8
B
47 52anti-parallel
Strand 9
B
168 169anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 217first strand
Strand 2
B
228 234anti-parallel
Strand 3
B
241 247anti-parallel
Strand 4
B
184 191parallel
Strand 5
B
267 274anti-parallel
Strand 6
B
347 353parallel
Strand 7
B
330 336anti-parallel
Strand 8
B
323 327anti-parallel
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