Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T5B entry

There are 2 chains in PDB entry 1T5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 201
B
 MET 1ALA 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1T5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 15Right-handed 310
Helix 2
2
A
16 33Right-handed alpha
Helix 3
3
A
52 59Right-handed alpha
Helix 4
4
A
67 87Right-handed alpha
Helix 5
5
A
102 113Right-handed alpha
Helix 6
6
A
152 164Right-handed alpha
Helix 7
7
A
176 179Right-handed 310
Helix 8
8
A
180 201Right-handed alpha
Helix 9
9
B
12 15Right-handed 310
Helix 10
10
B
16 33Right-handed alpha
Helix 11
11
B
52 59Right-handed alpha
Helix 12
12
B
67 87Right-handed alpha
Helix 13
13
B
102 113Right-handed alpha
Helix 14
14
B
152 164Right-handed alpha
Helix 15
15
B
176 179Right-handed 310
Helix 16
16
B
180 201Right-handed alpha
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There are 4 sheets in PDB entry 1T5B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
3 8parallel
Strand 3
A
89 93parallel
Strand 4
A
134 140parallel
Strand 5
A
169 174parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
125 128anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
3 8parallel
Strand 3
B
89 93parallel
Strand 4
B
134 140parallel
Strand 5
B
169 174parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
125 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il