Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T5C entry

There are 2 chains in PDB entry 1T5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4SER 339
B
 GLY 5SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1T5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 66Right-handed alpha
Helix 2
2
A
67 76Right-handed alpha
Helix 3
3
A
91 97Right-handed alpha
Helix 4
4
A
104 117Right-handed alpha
Helix 5
5
A
118 120Right-handed 310
Helix 6
6
A
174 188Right-handed alpha
Helix 7
7
A
238 242Right-handed 310
Helix 8
8
A
259 275Right-handed alpha
Helix 9
9
A
282 285Right-handed 310
Helix 10
10
A
286 292Right-handed alpha
Helix 11
11
A
293 296Right-handed 310
Helix 12
12
A
313 327Right-handed alpha
Helix 13
13
B
58 66Right-handed alpha
Helix 14
14
B
66 75Right-handed alpha
Helix 15
15
B
91 97Right-handed alpha
Helix 16
16
B
104 118Right-handed alpha
Helix 17
17
B
174 188Right-handed alpha
Helix 18
18
B
199 203Right-handed 310
Helix 19
19
B
259 275Right-handed alpha
Helix 20
20
B
282 285Right-handed 310
Helix 21
21
B
286 292Right-handed alpha
Helix 22
22
B
313 327Right-handed alpha
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There are 6 sheets in PDB entry 1T5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
7 13parallel
Strand 3
A
301 308parallel
Strand 4
A
80 86parallel
Strand 5
A
226 235parallel
Strand 6
A
204 215anti-parallel
Strand 7
A
123 135anti-parallel
Strand 8
A
170 171anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
123 135anti-parallel
Strand 3
A
204 215anti-parallel
Strand 4
A
226 235anti-parallel
Strand 5
A
337 338anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
46 48anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
163 164anti-parallel
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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
7 13parallel
Strand 3
B
300 308parallel
Strand 4
B
79 86parallel
Strand 5
B
226 235parallel
Strand 6
B
337 338anti-parallel
Strand 7
B
226 235anti-parallel
Strand 8
B
204 215anti-parallel
Strand 9
B
123 124anti-parallel
Strand 10
B
204 215anti-parallel
Strand 11
B
127 135anti-parallel
Strand 12
B
138 141anti-parallel
Strand 13
B
127 135anti-parallel
Strand 14
B
170 172anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
46 48anti-parallel
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