Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T5L entry

There are 2 chains in PDB entry 1T5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 1VAL 595
B
VAL 1VAL 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 1T5L. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 31Right-handed alpha
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
116 133Right-handed alpha
Helix 6
6
A
142 146Right-handed 310
Helix 7
7
A
150 157Right-handed alpha
Helix 8
8
A
168 179Right-handed alpha
Helix 9
9
A
252 277Right-handed alpha
Helix 10
10
A
279 301Right-handed alpha
Helix 11
11
A
305 308Right-handed 310
Helix 12
12
A
309 315Right-handed alpha
Helix 13
13
A
324 329Right-handed alpha
Helix 14
14
A
339 364Right-handed alpha
Helix 15
15
A
368 374Right-handed 310
Helix 16
16
A
378 386Right-handed alpha
Helix 17
17
A
397 404Right-handed alpha
Helix 18
18
A
429 444Right-handed alpha
Helix 19
19
A
454 467Right-handed alpha
Helix 20
20
A
480 493Right-handed alpha
Helix 21
21
A
526 529Right-handed 310
Helix 22
22
A
530 539Right-handed alpha
Helix 23
23
A
540 542Right-handed 310
Helix 24
24
A
557 582Right-handed alpha
Helix 25
25
B
16 30Right-handed alpha
Helix 26
26
B
44 57Right-handed alpha
Helix 27
27
B
66 81Right-handed alpha
Helix 28
28
B
91 95Right-handed 310
Helix 29
29
B
116 133Right-handed alpha
Helix 30
30
B
142 146Right-handed 310
Helix 31
31
B
150 157Right-handed alpha
Helix 32
32
B
168 178Right-handed alpha
Helix 33
33
B
252 277Right-handed alpha
Helix 34
34
B
279 301Right-handed alpha
Helix 35
35
B
305 308Right-handed 310
Helix 36
36
B
309 314Right-handed alpha
Helix 37
37
B
324 329Right-handed 310
Helix 38
38
B
339 349Right-handed alpha
Helix 39
39
B
349 364Right-handed alpha
Helix 40
40
B
368 374Right-handed 310
Helix 41
41
B
378 386Right-handed alpha
Helix 42
42
B
397 404Right-handed alpha
Helix 43
43
B
429 444Right-handed alpha
Helix 44
44
B
454 467Right-handed alpha
Helix 45
45
B
480 493Right-handed alpha
Helix 46
46
B
526 529Right-handed 310
Helix 47
47
B
530 539Right-handed alpha
Helix 48
48
B
540 542Right-handed 310
Helix 49
49
B
557 582Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1T5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 89first strand
Strand 2
A
136 140parallel
Strand 3
A
60 63parallel
Strand 4
A
334 338parallel
Strand 5
A
388 393parallel
Strand 6
A
34 39parallel
Strand 7
A
408 410parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 102first strand
Strand 2
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 162first strand
Strand 2
A
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
182 183first strand
Strand 2
A
192 195parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
210 216anti-parallel
Strand 5
A
221 228anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
421 425first strand
Strand 2
A
548 552parallel
Strand 3
A
514 519parallel
Strand 4
A
447 451parallel
Strand 5
A
498 501parallel
Strand 6
A
472 475parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
85 89first strand
Strand 2
B
136 140parallel
Strand 3
B
60 63parallel
Strand 4
B
334 338parallel
Strand 5
B
388 393parallel
Strand 6
B
34 39parallel
Strand 7
B
408 410parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 102first strand
Strand 2
B
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 162first strand
Strand 2
B
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
182 183first strand
Strand 2
B
192 196parallel
Strand 3
B
199 202anti-parallel
Strand 4
B
210 216anti-parallel
Strand 5
B
221 228anti-parallel
Strand 6
B
234 237anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
421 425first strand
Strand 2
B
548 552parallel
Strand 3
B
514 519parallel
Strand 4
B
447 451parallel
Strand 5
B
498 501parallel
Strand 6
B
474 475parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il