Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T5O entry

There are 4 chains in PDB entry 1T5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 341
B
 SER 2PHE 341
C
 SER 2PHE 341
D
 SER 2PHE 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 1T5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 20Right-handed 310
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
46 62Right-handed alpha
Helix 4
4
A
69 86Right-handed alpha
Helix 5
5
A
91 106Right-handed alpha
Helix 6
6
A
110 142Right-handed alpha
Helix 7
7
A
166 177Right-handed alpha
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
197 205Right-handed alpha
Helix 10
10
A
213 215Right-handed 310
Helix 11
11
A
216 223Right-handed alpha
Helix 12
12
A
246 257Right-handed alpha
Helix 13
13
A
266 270Right-handed 310
Helix 14
14
A
275 279Right-handed 310
Helix 15
15
A
286 290Right-handed alpha
Helix 16
16
A
315 317Right-handed 310
Helix 17
17
A
330 339Right-handed alpha
Helix 18
18
B
17 20Right-handed 310
Helix 19
19
B
31 41Right-handed alpha
Helix 20
20
B
46 62Right-handed alpha
Helix 21
21
B
69 88Right-handed alpha
Helix 22
22
B
91 106Right-handed alpha
Helix 23
23
B
110 142Right-handed alpha
Helix 24
24
B
166 177Right-handed alpha
Helix 25
25
B
192 197Right-handed alpha
Helix 26
26
B
197 205Right-handed alpha
Helix 27
27
B
213 215Right-handed 310
Helix 28
28
B
216 223Right-handed alpha
Helix 29
29
B
246 257Right-handed alpha
Helix 30
30
B
266 270Right-handed 310
Helix 31
31
B
275 279Right-handed 310
Helix 32
32
B
286 290Right-handed alpha
Helix 33
33
B
315 317Right-handed 310
Helix 34
34
B
330 339Right-handed alpha
Helix 35
35
C
17 20Right-handed 310
Helix 36
36
C
31 41Right-handed alpha
Helix 37
37
C
46 62Right-handed alpha
Helix 38
38
C
69 87Right-handed alpha
Helix 39
39
C
92 107Right-handed alpha
Helix 40
40
C
110 142Right-handed alpha
Helix 41
41
C
166 177Right-handed alpha
Helix 42
42
C
192 197Right-handed alpha
Helix 43
43
C
197 205Right-handed alpha
Helix 44
44
C
213 215Right-handed 310
Helix 45
45
C
216 223Right-handed alpha
Helix 46
46
C
246 257Right-handed alpha
Helix 47
47
C
266 270Right-handed 310
Helix 48
48
C
275 279Right-handed 310
Helix 49
49
C
286 290Right-handed alpha
Helix 50
50
C
315 317Right-handed 310
Helix 51
51
C
330 339Right-handed alpha
Helix 52
52
D
17 20Right-handed 310
Helix 53
53
D
31 41Right-handed alpha
Helix 54
54
D
46 62Right-handed alpha
Helix 55
55
D
69 88Right-handed alpha
Helix 56
56
D
91 106Right-handed alpha
Helix 57
57
D
110 142Right-handed alpha
Helix 58
58
D
166 177Right-handed alpha
Helix 59
59
D
192 197Right-handed alpha
Helix 60
60
D
197 206Right-handed alpha
Helix 61
61
D
213 215Right-handed 310
Helix 62
62
D
216 223Right-handed alpha
Helix 63
63
D
246 257Right-handed alpha
Helix 64
64
D
266 270Right-handed 310
Helix 65
65
D
275 279Right-handed 310
Helix 66
66
D
286 290Right-handed alpha
Helix 67
67
D
315 317Right-handed 310
Helix 68
68
D
330 340Right-handed alpha
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There are 16 sheets in PDB entry 1T5O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
26 29anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
261 264parallel
Strand 4
A
228 231parallel
Strand 5
A
149 152parallel
Strand 6
A
182 186parallel
Strand 7
A
208 212parallel
Strand 8
B
303 304parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
309 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
295 296anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
B
209 212parallel
Strand 3
B
181 186parallel
Strand 4
B
148 152parallel
Strand 5
B
228 231parallel
Strand 6
B
261 264parallel
Strand 7
B
319 322parallel
Strand 8
B
325 327anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
26 29anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
309 313anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
295 296anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
12 15anti-parallel
Strand 3
C
26 29anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 327first strand
Strand 2
C
319 322anti-parallel
Strand 3
C
261 264parallel
Strand 4
C
228 231parallel
Strand 5
C
148 152parallel
Strand 6
C
181 186parallel
Strand 7
C
209 212parallel
Strand 8
D
303 304parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 236first strand
Strand 2
C
240 244anti-parallel
Strand 3
C
309 313anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
295 296anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
303 304first strand
Strand 2
D
209 212parallel
Strand 3
D
182 186parallel
Strand 4
D
149 152parallel
Strand 5
D
228 231parallel
Strand 6
D
261 264parallel
Strand 7
D
319 322parallel
Strand 8
D
325 327anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
12 15anti-parallel
Strand 3
D
26 28anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
235 237first strand
Strand 2
D
240 244anti-parallel
Strand 3
D
309 313anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 292first strand
Strand 2
D
295 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il