Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T5W entry

There are 6 chains in PDB entry 1T5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASP 181
B
 GLY 1ALA 190
C
 ALA 0SER 12
D
 GLU 3ASP 181
E
 GLY 1ALA 190
F
 ALA 0SER 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1T5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 51Right-handed 310
Helix 2
2
A
55 77Right-handed alpha
Helix 3
3
B
51 53Right-handed 310
Helix 4
4
B
54 63Right-handed alpha
Helix 5
5
B
64 78Right-handed alpha
Helix 6
6
B
78 87Right-handed alpha
Helix 7
7
D
45 51Right-handed 310
Helix 8
8
D
55 77Right-handed alpha
Helix 9
9
E
51 53Right-handed 310
Helix 10
10
E
54 62Right-handed alpha
Helix 11
11
E
64 78Right-handed alpha
Helix 12
12
E
78 87Right-handed alpha
Helix 13
13
E
88 90Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 1T5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 15anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
23 31anti-parallel
Strand 7
B
36 41anti-parallel
Strand 8
B
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
170 176anti-parallel
Strand 4
B
184 189anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 43first strand
Strand 2
D
29 35anti-parallel
Strand 3
D
19 26anti-parallel
Strand 4
D
5 15anti-parallel
Strand 5
E
7 18anti-parallel
Strand 6
E
23 31anti-parallel
Strand 7
E
36 41anti-parallel
Strand 8
E
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
103 112anti-parallel
Strand 3
D
145 153anti-parallel
Strand 4
D
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
103 112anti-parallel
Strand 3
D
145 153anti-parallel
Strand 4
D
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 128first strand
Strand 2
D
118 123anti-parallel
Strand 3
D
161 166anti-parallel
Strand 4
D
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 104first strand
Strand 2
E
113 122anti-parallel
Strand 3
E
155 163anti-parallel
Strand 4
E
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 104first strand
Strand 2
E
113 122anti-parallel
Strand 3
E
155 163anti-parallel
Strand 4
E
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 138first strand
Strand 2
E
128 133anti-parallel
Strand 3
E
170 176anti-parallel
Strand 4
E
184 189anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il