Analysis of interatomic Contacts of Structural Units in PDB entry:
1T62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T62 entry

There are 2 chains in PDB entry 1T62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001HIS 1166
B
 MET 2001HIS 2166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1T62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1001 1017Right-handed alpha
Helix 2
2
A
1032 1045Right-handed alpha
Helix 3
3
A
1096 1098Right-handed 310
Helix 4
4
A
1099 1107Right-handed alpha
Helix 5
5
A
1114 1129Right-handed alpha
Helix 6
6
B
2001 2017Right-handed alpha
Helix 7
7
B
2032 2045Right-handed alpha
Helix 8
8
B
2055 2061Right-handed alpha
Helix 9
9
B
2096 2098Right-handed 310
Helix 10
10
B
2099 2106Right-handed alpha
Helix 11
11
B
2112 2129Right-handed alpha
Helix 12
12
B
2130 2132Right-handed 310
Helix 13
13
B
2153 2157Right-handed 310
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There are 2 sheets in PDB entry 1T62. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1024 1026first strand
Strand 2
A
1071 1075parallel
Strand 3
A
1081 1094anti-parallel
Strand 4
A
1140 1150anti-parallel
Strand 5
A
1050 1054anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2024 2027first strand
Strand 2
B
2071 2075parallel
Strand 3
B
2081 2094anti-parallel
Strand 4
B
2140 2151anti-parallel
Strand 5
B
2050 2054anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il