Analysis of interatomic Contacts of Structural Units in PDB entry:
1T6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T6D entry

There are 4 chains in PDB entry 1T6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 8ASP 288
A
 LEU 290ASN 310
B
 ILE 8ASP 288
B
 LEU 290LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1T6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 53Right-handed alpha
Helix 2
2
A
56 77Right-handed alpha
Helix 3
3
A
88 93Right-handed 310
Helix 4
4
A
95 108Right-handed alpha
Helix 5
5
A
115 131Right-handed alpha
Helix 6
6
A
166 175Right-handed alpha
Helix 7
7
A
181 198Right-handed alpha
Helix 8
8
A
210 221Right-handed alpha
Helix 9
9
A
227 232Right-handed alpha
Helix 10
10
A
238 250Right-handed alpha
Helix 11
11
A
252 260Right-handed alpha
Helix 12
12
A
264 269Right-handed alpha
Helix 13
13
A
270 285Right-handed alpha
Helix 14
14
A
296 310Right-handed alpha
Helix 15
15
B
48 53Right-handed alpha
Helix 16
16
B
56 77Right-handed alpha
Helix 17
17
B
89 93Right-handed 310
Helix 18
18
B
95 108Right-handed alpha
Helix 19
19
B
115 132Right-handed alpha
Helix 20
20
B
166 175Right-handed alpha
Helix 21
21
B
181 198Right-handed alpha
Helix 22
22
B
210 221Right-handed alpha
Helix 23
23
B
227 232Right-handed alpha
Helix 24
24
B
238 250Right-handed alpha
Helix 25
25
B
252 260Right-handed alpha
Helix 26
26
B
264 268Right-handed 310
Helix 27
27
B
269 269Right-handed 310
Helix 28
28
B
270 285Right-handed alpha
Helix 29
29
B
296 305Right-handed alpha
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There are 4 sheets in PDB entry 1T6D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 42first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
9 16anti-parallel
Strand 4
A
81 86parallel
Strand 5
A
111 113parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 163first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
205 209parallel
Strand 5
A
289 292parallel
Strand 6
A
235 237anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 42first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
10 16anti-parallel
Strand 4
B
81 86parallel
Strand 5
B
111 113parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 163first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
205 209parallel
Strand 5
B
289 293parallel
Strand 6
B
235 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il