Analysis of interatomic Contacts of Structural Units in PDB entry:
1T6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T6J entry

There are 4 chains in PDB entry 1T6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39SER 210
A
 ASP 214ALA 716
B
 THR 39SER 210
B
 ASP 214ALA 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1T6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 54Right-handed alpha
Helix 2
2
A
68 78Right-handed alpha
Helix 3
3
A
88 103Right-handed alpha
Helix 4
4
A
125 137Right-handed alpha
Helix 5
5
A
161 177Right-handed alpha
Helix 6
6
A
184 197Right-handed alpha
Helix 7
7
A
214 226Right-handed alpha
Helix 8
8
A
246 253Right-handed alpha
Helix 9
9
A
265 270Right-handed alpha
Helix 10
10
A
272 304Right-handed alpha
Helix 11
11
A
307 316Right-handed 310
Helix 12
12
A
322 337Right-handed alpha
Helix 13
13
A
362 367Right-handed alpha
Helix 14
14
A
367 392Right-handed alpha
Helix 15
15
A
402 405Right-handed 310
Helix 16
16
A
415 444Right-handed alpha
Helix 17
17
A
460 464Right-handed 310
Helix 18
18
A
467 485Right-handed alpha
Helix 19
19
A
488 492Right-handed 310
Helix 20
20
A
505 561Right-handed alpha
Helix 21
21
A
562 565Right-handed 310
Helix 22
22
A
570 586Right-handed alpha
Helix 23
23
A
592 612Right-handed alpha
Helix 24
24
A
619 647Right-handed alpha
Helix 25
25
A
648 657Right-handed 310
Helix 26
26
A
662 671Right-handed alpha
Helix 27
27
A
680 685Right-handed alpha
Helix 28
28
A
690 705Right-handed alpha
Helix 29
29
A
707 716Right-handed alpha
Helix 30
30
B
43 52Right-handed alpha
Helix 31
31
B
68 78Right-handed alpha
Helix 32
32
B
87 103Right-handed alpha
Helix 33
33
B
125 134Right-handed alpha
Helix 34
34
B
161 177Right-handed alpha
Helix 35
35
B
184 197Right-handed alpha
Helix 36
36
B
214 226Right-handed alpha
Helix 37
37
B
246 251Right-handed alpha
Helix 38
38
B
265 270Right-handed alpha
Helix 39
39
B
272 304Right-handed alpha
Helix 40
40
B
307 316Right-handed 310
Helix 41
41
B
322 337Right-handed alpha
Helix 42
42
B
362 367Right-handed alpha
Helix 43
43
B
367 393Right-handed alpha
Helix 44
44
B
402 405Right-handed 310
Helix 45
45
B
415 444Right-handed alpha
Helix 46
46
B
460 464Right-handed 310
Helix 47
47
B
467 485Right-handed alpha
Helix 48
48
B
488 492Right-handed 310
Helix 49
49
B
495 499Right-handed 310
Helix 50
50
B
505 560Right-handed alpha
Helix 51
51
B
561 565Right-handed 310
Helix 52
52
B
570 587Right-handed alpha
Helix 53
53
B
593 612Right-handed alpha
Helix 54
54
B
618 647Right-handed alpha
Helix 55
55
B
648 657Right-handed 310
Helix 56
56
B
659 671Right-handed alpha
Helix 57
57
B
690 704Right-handed alpha
Helix 58
58
B
706 716Right-handed alpha
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There are 6 sheets in PDB entry 1T6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
82 84parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
240 245anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
407 408anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
82 84parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
232 237anti-parallel
Strand 3
B
240 245anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 401first strand
Strand 2
B
406 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il