Analysis of interatomic Contacts of Structural Units in PDB entry:
1T6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T6M entry

There are 2 chains in PDB entry 1T6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ILE 300
B
 ALA 5ILE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1T6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 13Right-handed 310
Helix 2
2
A
39 43Right-handed 310
Helix 3
3
A
45 53Right-handed alpha
Helix 4
4
A
58 65Right-handed alpha
Helix 5
5
A
95 109Right-handed alpha
Helix 6
6
A
131 140Right-handed alpha
Helix 7
7
A
154 159Right-handed alpha
Helix 8
8
A
207 225Right-handed alpha
Helix 9
9
A
248 268Right-handed alpha
Helix 10
10
A
287 295Right-handed alpha
Helix 11
11
A
296 300Right-handed 310
Helix 12
12
B
7 13Right-handed 310
Helix 13
13
B
26 30Right-handed 310
Helix 14
14
B
45 53Right-handed alpha
Helix 15
15
B
58 65Right-handed alpha
Helix 16
16
B
95 109Right-handed alpha
Helix 17
17
B
131 140Right-handed alpha
Helix 18
18
B
154 159Right-handed alpha
Helix 19
19
B
207 225Right-handed alpha
Helix 20
20
B
248 268Right-handed alpha
Helix 21
21
B
287 295Right-handed alpha
Helix 22
22
B
296 300Right-handed 310
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There are 4 sheets in PDB entry 1T6M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
114 120parallel
Strand 5
A
162 167parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
32 35parallel
Strand 5
A
274 277parallel
Strand 6
A
231 236parallel
Strand 7
A
196 201parallel
Strand 8
A
187 193anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
69 76anti-parallel
Strand 4
B
114 120parallel
Strand 5
B
162 167parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
69 76anti-parallel
Strand 4
B
32 35parallel
Strand 5
B
274 277parallel
Strand 6
B
231 236parallel
Strand 7
B
196 201parallel
Strand 8
B
187 193anti-parallel
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