Analysis of interatomic Contacts of Structural Units in PDB entry:
1T6X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T6X entry

There are 2 chains in PDB entry 1T6X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 288
B
 VAL 302PHE 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1T6X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 30Right-handed alpha
Helix 2
2
A
41 46Right-handed 310
Helix 3
3
A
55 64Right-handed alpha
Helix 4
4
A
73 78Right-handed alpha
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
111 118Right-handed alpha
Helix 8
8
A
136 146Right-handed alpha
Helix 9
9
A
152 157Right-handed alpha
Helix 10
10
A
265 287Right-handed alpha
Helix 11
11
B
312 330Right-handed alpha
Helix 12
12
B
341 346Right-handed 310
Helix 13
13
B
355 365Right-handed alpha
Helix 14
14
B
373 377Right-handed 310
Helix 15
15
B
381 390Right-handed alpha
Helix 16
16
B
405 409Right-handed 310
Helix 17
17
B
411 417Right-handed alpha
Helix 18
18
B
436 446Right-handed alpha
Helix 19
19
B
452 457Right-handed alpha
Helix 20
20
B
562 587Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1T6X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
34 38parallel
Strand 3
A
3 6parallel
Strand 4
A
95 99parallel
Strand 5
A
121 125parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
245 256anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
229 235anti-parallel
Strand 6
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
334 338parallel
Strand 3
B
303 306parallel
Strand 4
B
395 398parallel
Strand 5
B
421 424parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
433 434anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 466first strand
Strand 2
B
481 484anti-parallel
Strand 3
B
529 534anti-parallel
Strand 4
B
509 517anti-parallel
Strand 5
B
496 503anti-parallel
Strand 6
B
545 556anti-parallel
Strand 7
B
461 466anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il