Analysis of interatomic Contacts of Structural Units in PDB entry:
1T89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T89 entry

There are 3 chains in PDB entry 1T89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 235SER 444
B
 ALA 231LEU 443
C
 LEU 5THR 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 1T89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
309 315Right-handed alpha
Helix 2
2
A
354 358Right-handed 310
Helix 3
3
A
413 419Right-handed alpha
Helix 4
4
B
246 252Right-handed alpha
Helix 5
5
B
309 316Right-handed alpha
Helix 6
6
B
354 358Right-handed 310
Helix 7
7
B
413 419Right-handed alpha
Helix 8
8
C
62 66Right-handed 310
Helix 9
9
C
114 116Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 1T89. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
319 324anti-parallel
Strand 4
A
332 336anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
366 372anti-parallel
Strand 3
A
404 406anti-parallel
Strand 4
A
397 398anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
422 427anti-parallel
Strand 3
A
437 442anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
258 266anti-parallel
Strand 3
B
300 307anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
319 323anti-parallel
Strand 3
B
332 336anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
364 372anti-parallel
Strand 3
B
404 411anti-parallel
Strand 4
B
391 393anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 382first strand
Strand 2
B
423 428anti-parallel
Strand 3
B
439 441anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
25 30anti-parallel
Strand 3
C
55 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
82 87parallel
Strand 3
C
67 73anti-parallel
Strand 4
C
40 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
109 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 135first strand
Strand 2
C
118 125anti-parallel
Strand 3
C
150 158anti-parallel
Strand 4
C
161 164anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 135first strand
Strand 2
C
118 125anti-parallel
Strand 3
C
150 158anti-parallel
Strand 4
C
168 170anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il