Analysis of interatomic Contacts of Structural Units in PDB entry:
1T8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T8R entry

There are 6 chains in PDB entry 1T8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 484
B
 LEU 8ARG 484
C
 LEU 8ARG 484
D
 LEU 8ARG 484
E
 LEU 8ARG 484
F
 LEU 8ARG 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are125 helices in PDB entry 1T8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 38Right-handed alpha
Helix 2
2
A
43 49Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
175 191Right-handed alpha
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
206 223Right-handed alpha
Helix 9
9
A
253 258Right-handed alpha
Helix 10
10
A
281 293Right-handed alpha
Helix 11
11
A
294 296Right-handed 310
Helix 12
12
A
344 360Right-handed alpha
Helix 13
13
A
364 368Right-handed 310
Helix 14
14
A
382 385Right-handed 310
Helix 15
15
A
386 397Right-handed alpha
Helix 16
16
A
405 417Right-handed alpha
Helix 17
17
A
429 433Right-handed 310
Helix 18
18
A
442 447Right-handed alpha
Helix 19
19
A
448 466Right-handed alpha
Helix 20
20
A
467 471Right-handed 310
Helix 21
21
A
472 476Right-handed 310
Helix 22
22
B
9 38Right-handed alpha
Helix 23
23
B
43 49Right-handed alpha
Helix 24
24
B
93 109Right-handed alpha
Helix 25
25
B
122 126Right-handed 310
Helix 26
26
B
135 146Right-handed alpha
Helix 27
27
B
175 191Right-handed alpha
Helix 28
28
B
193 197Right-handed 310
Helix 29
29
B
206 223Right-handed alpha
Helix 30
30
B
253 258Right-handed alpha
Helix 31
31
B
281 293Right-handed alpha
Helix 32
32
B
294 296Right-handed 310
Helix 33
33
B
344 359Right-handed alpha
Helix 34
34
B
362 368Right-handed 310
Helix 35
35
B
382 385Right-handed 310
Helix 36
36
B
386 397Right-handed alpha
Helix 37
37
B
405 417Right-handed alpha
Helix 38
38
B
429 433Right-handed 310
Helix 39
39
B
442 447Right-handed alpha
Helix 40
40
B
448 466Right-handed alpha
Helix 41
41
B
467 471Right-handed 310
Helix 42
42
B
472 476Right-handed 310
Helix 43
43
C
9 38Right-handed alpha
Helix 44
44
C
43 49Right-handed alpha
Helix 45
45
C
93 109Right-handed alpha
Helix 46
46
C
122 126Right-handed 310
Helix 47
47
C
135 146Right-handed alpha
Helix 48
48
C
175 191Right-handed alpha
Helix 49
49
C
193 197Right-handed 310
Helix 50
50
C
206 223Right-handed alpha
Helix 51
51
C
253 258Right-handed alpha
Helix 52
52
C
281 293Right-handed alpha
Helix 53
53
C
294 296Right-handed 310
Helix 54
54
C
344 359Right-handed alpha
Helix 55
55
C
364 368Right-handed 310
Helix 56
56
C
382 385Right-handed 310
Helix 57
57
C
386 397Right-handed alpha
Helix 58
58
C
405 416Right-handed alpha
Helix 59
59
C
429 433Right-handed 310
Helix 60
60
C
442 447Right-handed alpha
Helix 61
61
C
448 466Right-handed alpha
Helix 62
62
C
467 471Right-handed 310
Helix 63
63
C
472 476Right-handed 310
Helix 64
64
D
9 38Right-handed alpha
Helix 65
65
D
43 49Right-handed alpha
Helix 66
66
D
93 109Right-handed alpha
Helix 67
67
D
122 126Right-handed 310
Helix 68
68
D
135 146Right-handed alpha
Helix 69
69
D
175 191Right-handed alpha
Helix 70
70
D
193 197Right-handed 310
Helix 71
71
D
206 223Right-handed alpha
Helix 72
72
D
253 258Right-handed alpha
Helix 73
73
D
281 293Right-handed alpha
Helix 74
74
D
294 296Right-handed 310
Helix 75
75
D
344 360Right-handed alpha
Helix 76
76
D
365 368Right-handed 310
Helix 77
77
D
382 385Right-handed 310
Helix 78
78
D
386 398Right-handed alpha
Helix 79
79
D
405 416Right-handed alpha
Helix 80
80
D
429 433Right-handed 310
Helix 81
81
D
442 447Right-handed alpha
Helix 82
82
D
448 466Right-handed alpha
Helix 83
83
D
467 471Right-handed 310
Helix 84
84
D
472 476Right-handed 310
Helix 85
85
E
9 38Right-handed alpha
Helix 86
86
E
43 49Right-handed alpha
Helix 87
87
E
93 109Right-handed alpha
Helix 88
88
E
122 126Right-handed 310
Helix 89
89
E
135 146Right-handed alpha
Helix 90
90
E
175 191Right-handed alpha
Helix 91
91
E
193 197Right-handed 310
Helix 92
92
E
206 223Right-handed alpha
Helix 93
93
E
253 258Right-handed alpha
Helix 94
94
E
281 293Right-handed alpha
Helix 95
95
E
294 296Right-handed 310
Helix 96
96
E
344 359Right-handed alpha
Helix 97
97
E
363 368Right-handed 310
Helix 98
98
E
382 385Right-handed 310
Helix 99
99
E
386 397Right-handed alpha
Helix 100
100
E
405 416Right-handed alpha
Helix 101
101
E
429 433Right-handed 310
Helix 102
102
E
442 447Right-handed alpha
Helix 103
103
E
448 466Right-handed alpha
Helix 104
104
E
467 471Right-handed 310
Helix 105
105
E
472 476Right-handed 310
Helix 106
106
F
9 38Right-handed alpha
Helix 107
107
F
43 49Right-handed alpha
Helix 108
108
F
93 109Right-handed alpha
Helix 109
109
F
122 126Right-handed 310
Helix 110
110
F
135 146Right-handed alpha
Helix 111
111
F
175 191Right-handed alpha
Helix 112
112
F
193 197Right-handed 310
Helix 113
113
F
206 223Right-handed alpha
Helix 114
114
F
253 258Right-handed alpha
Helix 115
115
F
281 293Right-handed alpha
Helix 116
116
F
294 296Right-handed 310
Helix 117
117
F
344 359Right-handed alpha
Helix 118
118
F
364 368Right-handed 310
Helix 119
119
F
382 385Right-handed 310
Helix 120
120
F
386 397Right-handed alpha
Helix 121
121
F
405 416Right-handed alpha
Helix 122
122
F
429 433Right-handed 310
Helix 123
123
F
442 466Right-handed alpha
Helix 124
124
F
467 471Right-handed 310
Helix 125
125
F
472 476Right-handed 310
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There are 12 sheets in PDB entry 1T8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 120first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
169 170parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
299 302parallel
Strand 7
A
420 428parallel
Strand 8
A
318 327anti-parallel
Strand 9
A
370 378parallel
Strand 10
A
399 403parallel
Strand 11
A
305 308anti-parallel
Strand 12
A
420 428parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 86first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
111 120anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
262 267anti-parallel
Strand 4
B
273 277anti-parallel
Strand 5
B
200 204parallel
Strand 6
B
299 302parallel
Strand 7
B
420 428parallel
Strand 8
B
318 327anti-parallel
Strand 9
B
370 378parallel
Strand 10
B
399 403parallel
Strand 11
B
305 308anti-parallel
Strand 12
B
420 428parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 120first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
169 170parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 240first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
262 267anti-parallel
Strand 4
C
273 277anti-parallel
Strand 5
C
200 204parallel
Strand 6
C
299 302parallel
Strand 7
C
420 428parallel
Strand 8
C
318 327anti-parallel
Strand 9
C
370 378parallel
Strand 10
C
399 403parallel
Strand 11
C
305 308anti-parallel
Strand 12
C
420 428parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 120first strand
Strand 2
D
53 61anti-parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
169 170parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 240first strand
Strand 2
D
228 233anti-parallel
Strand 3
D
262 267anti-parallel
Strand 4
D
273 277anti-parallel
Strand 5
D
200 204parallel
Strand 6
D
299 302parallel
Strand 7
D
420 428parallel
Strand 8
D
318 327anti-parallel
Strand 9
D
370 378parallel
Strand 10
D
399 403parallel
Strand 11
D
305 308anti-parallel
Strand 12
D
420 428parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 120first strand
Strand 2
E
53 61anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
169 170parallel
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There are 12 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 240first strand
Strand 2
E
228 233anti-parallel
Strand 3
E
262 267anti-parallel
Strand 4
E
273 277anti-parallel
Strand 5
E
200 204parallel
Strand 6
E
299 302parallel
Strand 7
E
420 428parallel
Strand 8
E
318 327anti-parallel
Strand 9
E
370 378parallel
Strand 10
E
399 403parallel
Strand 11
E
305 308anti-parallel
Strand 12
E
420 428parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
81 86first strand
Strand 2
F
53 61anti-parallel
Strand 3
F
111 120anti-parallel
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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 240first strand
Strand 2
F
228 233anti-parallel
Strand 3
F
262 267anti-parallel
Strand 4
F
273 277anti-parallel
Strand 5
F
200 204parallel
Strand 6
F
299 302parallel
Strand 7
F
420 428parallel
Strand 8
F
318 327anti-parallel
Strand 9
F
370 378parallel
Strand 10
F
399 403parallel
Strand 11
F
305 308anti-parallel
Strand 12
F
420 428parallel
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