Analysis of interatomic Contacts of Structural Units in PDB entry:
1T8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T8S entry

There are 6 chains in PDB entry 1T8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 484
B
 LEU 8ARG 484
C
 LEU 8ARG 484
D
 LEU 8ARG 484
E
 LEU 8ARG 484
F
 LEU 8ARG 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 1T8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 39Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
122 127Right-handed 310
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
175 191Right-handed alpha
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
207 223Right-handed alpha
Helix 9
9
A
245 249Right-handed 310
Helix 10
10
A
253 258Right-handed alpha
Helix 11
11
A
281 293Right-handed alpha
Helix 12
12
A
294 296Right-handed 310
Helix 13
13
A
344 359Right-handed alpha
Helix 14
14
A
362 368Right-handed 310
Helix 15
15
A
382 385Right-handed 310
Helix 16
16
A
386 398Right-handed alpha
Helix 17
17
A
405 416Right-handed alpha
Helix 18
18
A
447 466Right-handed alpha
Helix 19
19
B
9 39Right-handed alpha
Helix 20
20
B
43 48Right-handed alpha
Helix 21
21
B
93 109Right-handed alpha
Helix 22
22
B
122 127Right-handed 310
Helix 23
23
B
138 146Right-handed alpha
Helix 24
24
B
175 191Right-handed alpha
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
207 223Right-handed alpha
Helix 27
27
B
245 249Right-handed 310
Helix 28
28
B
253 258Right-handed alpha
Helix 29
29
B
281 293Right-handed alpha
Helix 30
30
B
294 296Right-handed 310
Helix 31
31
B
344 359Right-handed alpha
Helix 32
32
B
362 368Right-handed 310
Helix 33
33
B
382 385Right-handed 310
Helix 34
34
B
386 398Right-handed alpha
Helix 35
35
B
405 416Right-handed alpha
Helix 36
36
B
447 467Right-handed alpha
Helix 37
37
C
9 39Right-handed alpha
Helix 38
38
C
43 48Right-handed alpha
Helix 39
39
C
93 109Right-handed alpha
Helix 40
40
C
122 127Right-handed 310
Helix 41
41
C
135 146Right-handed alpha
Helix 42
42
C
175 191Right-handed alpha
Helix 43
43
C
193 197Right-handed 310
Helix 44
44
C
207 223Right-handed alpha
Helix 45
45
C
245 249Right-handed 310
Helix 46
46
C
253 258Right-handed alpha
Helix 47
47
C
281 293Right-handed alpha
Helix 48
48
C
294 296Right-handed 310
Helix 49
49
C
344 359Right-handed alpha
Helix 50
50
C
362 368Right-handed 310
Helix 51
51
C
382 385Right-handed 310
Helix 52
52
C
386 397Right-handed alpha
Helix 53
53
C
405 416Right-handed alpha
Helix 54
54
C
447 466Right-handed alpha
Helix 55
55
D
9 39Right-handed alpha
Helix 56
56
D
43 48Right-handed alpha
Helix 57
57
D
93 109Right-handed alpha
Helix 58
58
D
122 127Right-handed 310
Helix 59
59
D
138 146Right-handed alpha
Helix 60
60
D
175 191Right-handed alpha
Helix 61
61
D
193 197Right-handed 310
Helix 62
62
D
207 223Right-handed alpha
Helix 63
63
D
245 249Right-handed 310
Helix 64
64
D
253 258Right-handed alpha
Helix 65
65
D
281 293Right-handed alpha
Helix 66
66
D
294 296Right-handed 310
Helix 67
67
D
344 359Right-handed alpha
Helix 68
68
D
365 368Right-handed 310
Helix 69
69
D
382 385Right-handed 310
Helix 70
70
D
386 397Right-handed alpha
Helix 71
71
D
405 416Right-handed alpha
Helix 72
72
D
448 466Right-handed alpha
Helix 73
73
E
9 39Right-handed alpha
Helix 74
74
E
43 48Right-handed alpha
Helix 75
75
E
93 109Right-handed alpha
Helix 76
76
E
122 127Right-handed 310
Helix 77
77
E
135 146Right-handed alpha
Helix 78
78
E
175 191Right-handed alpha
Helix 79
79
E
193 197Right-handed 310
Helix 80
80
E
207 223Right-handed alpha
Helix 81
81
E
245 249Right-handed 310
Helix 82
82
E
253 258Right-handed alpha
Helix 83
83
E
281 293Right-handed alpha
Helix 84
84
E
294 296Right-handed 310
Helix 85
85
E
344 359Right-handed alpha
Helix 86
86
E
362 368Right-handed 310
Helix 87
87
E
382 385Right-handed 310
Helix 88
88
E
386 398Right-handed alpha
Helix 89
89
E
405 416Right-handed alpha
Helix 90
90
E
447 467Right-handed alpha
Helix 91
91
F
9 39Right-handed alpha
Helix 92
92
F
43 48Right-handed alpha
Helix 93
93
F
93 109Right-handed alpha
Helix 94
94
F
122 127Right-handed 310
Helix 95
95
F
137 146Right-handed alpha
Helix 96
96
F
175 191Right-handed alpha
Helix 97
97
F
193 197Right-handed 310
Helix 98
98
F
207 223Right-handed alpha
Helix 99
99
F
245 249Right-handed 310
Helix 100
100
F
253 258Right-handed alpha
Helix 101
101
F
281 293Right-handed alpha
Helix 102
102
F
294 296Right-handed 310
Helix 103
103
F
344 359Right-handed alpha
Helix 104
104
F
362 368Right-handed 310
Helix 105
105
F
382 385Right-handed 310
Helix 106
106
F
386 398Right-handed alpha
Helix 107
107
F
405 416Right-handed alpha
Helix 108
108
F
429 433Right-handed 310
Helix 109
109
F
447 466Right-handed alpha
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There are 12 sheets in PDB entry 1T8S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 120first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
169 170parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
299 302parallel
Strand 7
A
420 428parallel
Strand 8
A
318 327anti-parallel
Strand 9
A
370 378parallel
Strand 10
A
399 403parallel
Strand 11
A
305 308anti-parallel
Strand 12
A
420 428parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 120first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
169 170parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
262 267anti-parallel
Strand 4
B
273 277anti-parallel
Strand 5
B
200 204parallel
Strand 6
B
299 302parallel
Strand 7
B
420 428parallel
Strand 8
B
318 327anti-parallel
Strand 9
B
370 378parallel
Strand 10
B
399 403parallel
Strand 11
B
305 308anti-parallel
Strand 12
B
420 428parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 120first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
169 170parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 240first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
262 267anti-parallel
Strand 4
C
273 277anti-parallel
Strand 5
C
200 204parallel
Strand 6
C
299 308parallel
Strand 7
C
420 428parallel
Strand 8
C
318 327anti-parallel
Strand 9
C
370 378parallel
Strand 10
C
399 403parallel
Strand 11
C
299 308anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 120first strand
Strand 2
D
53 61anti-parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
169 170parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 240first strand
Strand 2
D
228 233anti-parallel
Strand 3
D
262 267anti-parallel
Strand 4
D
273 277anti-parallel
Strand 5
D
200 204parallel
Strand 6
D
299 302parallel
Strand 7
D
420 428parallel
Strand 8
D
318 327anti-parallel
Strand 9
D
370 378parallel
Strand 10
D
399 403parallel
Strand 11
D
305 308anti-parallel
Strand 12
D
420 428parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 120first strand
Strand 2
E
53 61anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
169 170parallel
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There are 11 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 240first strand
Strand 2
E
228 233anti-parallel
Strand 3
E
262 267anti-parallel
Strand 4
E
273 277anti-parallel
Strand 5
E
200 204parallel
Strand 6
E
299 308parallel
Strand 7
E
420 428parallel
Strand 8
E
318 327anti-parallel
Strand 9
E
370 378parallel
Strand 10
E
399 403parallel
Strand 11
E
299 308anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 120first strand
Strand 2
F
53 61anti-parallel
Strand 3
F
81 86anti-parallel
Strand 4
F
169 170parallel
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There are 11 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 240first strand
Strand 2
F
228 233anti-parallel
Strand 3
F
262 267anti-parallel
Strand 4
F
273 277anti-parallel
Strand 5
F
200 204parallel
Strand 6
F
299 308parallel
Strand 7
F
420 428parallel
Strand 8
F
318 327anti-parallel
Strand 9
F
370 378parallel
Strand 10
F
399 403parallel
Strand 11
F
299 308anti-parallel
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