Analysis of interatomic Contacts of Structural Units in PDB entry:
1T8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T8W entry

There are 6 chains in PDB entry 1T8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 484
B
 LEU 8ARG 484
C
 LEU 8ARG 484
D
 LEU 8ARG 484
E
 LEU 8ARG 484
F
 LEU 8ARG 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 1T8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 38Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
93 107Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
175 191Right-handed alpha
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
206 223Right-handed alpha
Helix 9
9
A
247 252Right-handed 310
Helix 10
10
A
253 258Right-handed alpha
Helix 11
11
A
281 293Right-handed alpha
Helix 12
12
A
294 296Right-handed 310
Helix 13
13
A
344 359Right-handed alpha
Helix 14
14
A
362 368Right-handed 310
Helix 15
15
A
382 385Right-handed 310
Helix 16
16
A
386 397Right-handed alpha
Helix 17
17
A
405 417Right-handed alpha
Helix 18
18
A
442 466Right-handed alpha
Helix 19
19
A
467 471Right-handed 310
Helix 20
20
B
9 38Right-handed alpha
Helix 21
21
B
43 48Right-handed alpha
Helix 22
22
B
93 107Right-handed alpha
Helix 23
23
B
122 126Right-handed 310
Helix 24
24
B
135 146Right-handed alpha
Helix 25
25
B
175 191Right-handed alpha
Helix 26
26
B
193 197Right-handed 310
Helix 27
27
B
206 223Right-handed alpha
Helix 28
28
B
247 252Right-handed 310
Helix 29
29
B
253 258Right-handed alpha
Helix 30
30
B
281 293Right-handed alpha
Helix 31
31
B
294 296Right-handed 310
Helix 32
32
B
344 359Right-handed alpha
Helix 33
33
B
364 368Right-handed 310
Helix 34
34
B
382 385Right-handed 310
Helix 35
35
B
386 397Right-handed alpha
Helix 36
36
B
405 416Right-handed alpha
Helix 37
37
B
442 466Right-handed alpha
Helix 38
38
B
467 471Right-handed 310
Helix 39
39
C
9 38Right-handed alpha
Helix 40
40
C
43 48Right-handed alpha
Helix 41
41
C
93 107Right-handed alpha
Helix 42
42
C
122 126Right-handed 310
Helix 43
43
C
135 146Right-handed alpha
Helix 44
44
C
175 191Right-handed alpha
Helix 45
45
C
193 197Right-handed 310
Helix 46
46
C
206 223Right-handed alpha
Helix 47
47
C
247 252Right-handed 310
Helix 48
48
C
253 258Right-handed alpha
Helix 49
49
C
281 293Right-handed alpha
Helix 50
50
C
294 296Right-handed 310
Helix 51
51
C
344 360Right-handed alpha
Helix 52
52
C
365 368Right-handed 310
Helix 53
53
C
382 385Right-handed 310
Helix 54
54
C
386 397Right-handed alpha
Helix 55
55
C
405 417Right-handed alpha
Helix 56
56
C
442 447Right-handed alpha
Helix 57
57
C
448 466Right-handed alpha
Helix 58
58
C
467 471Right-handed 310
Helix 59
59
D
9 38Right-handed alpha
Helix 60
60
D
43 48Right-handed alpha
Helix 61
61
D
93 107Right-handed alpha
Helix 62
62
D
122 126Right-handed 310
Helix 63
63
D
135 146Right-handed alpha
Helix 64
64
D
175 191Right-handed alpha
Helix 65
65
D
193 197Right-handed 310
Helix 66
66
D
206 223Right-handed alpha
Helix 67
67
D
247 252Right-handed 310
Helix 68
68
D
253 258Right-handed alpha
Helix 69
69
D
281 293Right-handed alpha
Helix 70
70
D
294 296Right-handed 310
Helix 71
71
D
344 359Right-handed alpha
Helix 72
72
D
364 368Right-handed 310
Helix 73
73
D
382 385Right-handed 310
Helix 74
74
D
386 397Right-handed alpha
Helix 75
75
D
405 417Right-handed alpha
Helix 76
76
D
442 466Right-handed alpha
Helix 77
77
D
467 471Right-handed 310
Helix 78
78
E
9 38Right-handed alpha
Helix 79
79
E
43 48Right-handed alpha
Helix 80
80
E
93 107Right-handed alpha
Helix 81
81
E
122 126Right-handed 310
Helix 82
82
E
135 146Right-handed alpha
Helix 83
83
E
175 191Right-handed alpha
Helix 84
84
E
193 197Right-handed 310
Helix 85
85
E
206 223Right-handed alpha
Helix 86
86
E
247 252Right-handed 310
Helix 87
87
E
253 258Right-handed alpha
Helix 88
88
E
281 293Right-handed alpha
Helix 89
89
E
294 296Right-handed 310
Helix 90
90
E
344 359Right-handed alpha
Helix 91
91
E
364 368Right-handed 310
Helix 92
92
E
382 385Right-handed 310
Helix 93
93
E
386 397Right-handed alpha
Helix 94
94
E
405 417Right-handed alpha
Helix 95
95
E
442 447Right-handed alpha
Helix 96
96
E
448 466Right-handed alpha
Helix 97
97
E
467 471Right-handed 310
Helix 98
98
F
9 38Right-handed alpha
Helix 99
99
F
43 48Right-handed alpha
Helix 100
100
F
93 107Right-handed alpha
Helix 101
101
F
122 126Right-handed 310
Helix 102
102
F
135 146Right-handed alpha
Helix 103
103
F
175 191Right-handed alpha
Helix 104
104
F
193 197Right-handed 310
Helix 105
105
F
206 223Right-handed alpha
Helix 106
106
F
247 252Right-handed 310
Helix 107
107
F
253 258Right-handed alpha
Helix 108
108
F
281 293Right-handed alpha
Helix 109
109
F
294 296Right-handed 310
Helix 110
110
F
344 359Right-handed alpha
Helix 111
111
F
364 368Right-handed 310
Helix 112
112
F
382 385Right-handed 310
Helix 113
113
F
386 397Right-handed alpha
Helix 114
114
F
405 416Right-handed alpha
Helix 115
115
F
442 466Right-handed alpha
Helix 116
116
F
467 471Right-handed 310
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There are 12 sheets in PDB entry 1T8W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 120first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
169 170parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
299 302parallel
Strand 7
A
420 428parallel
Strand 8
A
318 327anti-parallel
Strand 9
A
370 378parallel
Strand 10
A
399 403parallel
Strand 11
A
305 308anti-parallel
Strand 12
A
420 428parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 120first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
169 170parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
262 267anti-parallel
Strand 4
B
273 277anti-parallel
Strand 5
B
200 204parallel
Strand 6
B
299 302parallel
Strand 7
B
420 428parallel
Strand 8
B
318 327anti-parallel
Strand 9
B
370 378parallel
Strand 10
B
399 403parallel
Strand 11
B
305 308anti-parallel
Strand 12
B
420 428parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 120first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
169 170parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 240first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
262 267anti-parallel
Strand 4
C
273 277anti-parallel
Strand 5
C
200 204parallel
Strand 6
C
299 302parallel
Strand 7
C
420 428parallel
Strand 8
C
318 327anti-parallel
Strand 9
C
370 378parallel
Strand 10
C
399 403parallel
Strand 11
C
305 308anti-parallel
Strand 12
C
420 428parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 120first strand
Strand 2
D
53 61anti-parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
169 170parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 240first strand
Strand 2
D
228 233anti-parallel
Strand 3
D
262 267anti-parallel
Strand 4
D
273 277anti-parallel
Strand 5
D
200 204parallel
Strand 6
D
299 302parallel
Strand 7
D
420 428parallel
Strand 8
D
318 327anti-parallel
Strand 9
D
370 378parallel
Strand 10
D
399 403parallel
Strand 11
D
305 308anti-parallel
Strand 12
D
420 428parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 86first strand
Strand 2
E
53 61anti-parallel
Strand 3
E
111 120anti-parallel
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There are 12 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 240first strand
Strand 2
E
228 233anti-parallel
Strand 3
E
262 267anti-parallel
Strand 4
E
273 277anti-parallel
Strand 5
E
200 204parallel
Strand 6
E
299 302parallel
Strand 7
E
420 428parallel
Strand 8
E
318 327anti-parallel
Strand 9
E
370 378parallel
Strand 10
E
399 403parallel
Strand 11
E
305 308anti-parallel
Strand 12
E
420 428parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 120first strand
Strand 2
F
53 61anti-parallel
Strand 3
F
81 86anti-parallel
Strand 4
F
169 170parallel
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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 240first strand
Strand 2
F
228 233anti-parallel
Strand 3
F
262 267anti-parallel
Strand 4
F
273 277anti-parallel
Strand 5
F
200 204parallel
Strand 6
F
299 302parallel
Strand 7
F
420 428parallel
Strand 8
F
318 327anti-parallel
Strand 9
F
370 378parallel
Strand 10
F
399 403parallel
Strand 11
F
305 308anti-parallel
Strand 12
F
420 428parallel
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