Analysis of interatomic Contacts of Structural Units in PDB entry:
1T8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T8Y entry

There are 6 chains in PDB entry 1T8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 484
B
 LEU 8ARG 484
C
 LEU 8ARG 484
D
 LEU 8ARG 484
E
 LEU 8ARG 484
F
 LEU 8ARG 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are123 helices in PDB entry 1T8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 39Right-handed alpha
Helix 2
2
A
43 49Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
175 191Right-handed alpha
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
207 223Right-handed alpha
Helix 9
9
A
247 252Right-handed 310
Helix 10
10
A
253 258Right-handed alpha
Helix 11
11
A
281 293Right-handed alpha
Helix 12
12
A
294 296Right-handed 310
Helix 13
13
A
344 359Right-handed alpha
Helix 14
14
A
365 368Right-handed 310
Helix 15
15
A
382 385Right-handed 310
Helix 16
16
A
386 397Right-handed alpha
Helix 17
17
A
405 417Right-handed alpha
Helix 18
18
A
429 433Right-handed 310
Helix 19
19
A
442 447Right-handed alpha
Helix 20
20
A
448 466Right-handed alpha
Helix 21
21
A
467 471Right-handed 310
Helix 22
22
A
472 476Right-handed 310
Helix 23
23
B
9 39Right-handed alpha
Helix 24
24
B
43 49Right-handed alpha
Helix 25
25
B
93 109Right-handed alpha
Helix 26
26
B
122 127Right-handed 310
Helix 27
27
B
135 146Right-handed alpha
Helix 28
28
B
175 191Right-handed alpha
Helix 29
29
B
193 197Right-handed 310
Helix 30
30
B
207 223Right-handed alpha
Helix 31
31
B
247 252Right-handed 310
Helix 32
32
B
253 258Right-handed alpha
Helix 33
33
B
281 293Right-handed alpha
Helix 34
34
B
294 296Right-handed 310
Helix 35
35
B
344 359Right-handed alpha
Helix 36
36
B
365 368Right-handed 310
Helix 37
37
B
382 385Right-handed 310
Helix 38
38
B
386 397Right-handed alpha
Helix 39
39
B
405 417Right-handed alpha
Helix 40
40
B
429 433Right-handed 310
Helix 41
41
B
442 447Right-handed alpha
Helix 42
42
B
448 466Right-handed alpha
Helix 43
43
B
467 471Right-handed 310
Helix 44
44
C
9 39Right-handed alpha
Helix 45
45
C
43 49Right-handed alpha
Helix 46
46
C
93 109Right-handed alpha
Helix 47
47
C
122 126Right-handed 310
Helix 48
48
C
135 146Right-handed alpha
Helix 49
49
C
175 191Right-handed alpha
Helix 50
50
C
193 197Right-handed 310
Helix 51
51
C
206 223Right-handed alpha
Helix 52
52
C
247 252Right-handed 310
Helix 53
53
C
253 258Right-handed alpha
Helix 54
54
C
281 293Right-handed alpha
Helix 55
55
C
294 296Right-handed 310
Helix 56
56
C
344 359Right-handed alpha
Helix 57
57
C
365 368Right-handed 310
Helix 58
58
C
382 385Right-handed 310
Helix 59
59
C
386 397Right-handed alpha
Helix 60
60
C
405 417Right-handed alpha
Helix 61
61
C
442 447Right-handed alpha
Helix 62
62
C
448 466Right-handed alpha
Helix 63
63
C
467 471Right-handed 310
Helix 64
64
C
472 476Right-handed 310
Helix 65
65
D
9 39Right-handed alpha
Helix 66
66
D
43 49Right-handed alpha
Helix 67
67
D
93 109Right-handed alpha
Helix 68
68
D
122 126Right-handed 310
Helix 69
69
D
135 146Right-handed alpha
Helix 70
70
D
175 191Right-handed alpha
Helix 71
71
D
193 197Right-handed 310
Helix 72
72
D
207 223Right-handed alpha
Helix 73
73
D
247 252Right-handed 310
Helix 74
74
D
253 258Right-handed alpha
Helix 75
75
D
281 293Right-handed alpha
Helix 76
76
D
294 296Right-handed 310
Helix 77
77
D
344 359Right-handed alpha
Helix 78
78
D
364 368Right-handed 310
Helix 79
79
D
382 385Right-handed 310
Helix 80
80
D
386 397Right-handed alpha
Helix 81
81
D
405 417Right-handed alpha
Helix 82
82
D
429 433Right-handed 310
Helix 83
83
D
442 466Right-handed alpha
Helix 84
84
D
467 471Right-handed 310
Helix 85
85
E
9 39Right-handed alpha
Helix 86
86
E
43 49Right-handed alpha
Helix 87
87
E
93 109Right-handed alpha
Helix 88
88
E
122 126Right-handed 310
Helix 89
89
E
135 146Right-handed alpha
Helix 90
90
E
175 191Right-handed alpha
Helix 91
91
E
193 197Right-handed 310
Helix 92
92
E
207 223Right-handed alpha
Helix 93
93
E
247 252Right-handed 310
Helix 94
94
E
253 258Right-handed alpha
Helix 95
95
E
281 293Right-handed alpha
Helix 96
96
E
294 296Right-handed 310
Helix 97
97
E
344 359Right-handed alpha
Helix 98
98
E
362 368Right-handed 310
Helix 99
99
E
382 385Right-handed 310
Helix 100
100
E
386 397Right-handed alpha
Helix 101
101
E
405 417Right-handed alpha
Helix 102
102
E
442 466Right-handed alpha
Helix 103
103
E
467 471Right-handed 310
Helix 104
104
F
9 39Right-handed alpha
Helix 105
105
F
43 49Right-handed alpha
Helix 106
106
F
93 109Right-handed alpha
Helix 107
107
F
122 126Right-handed 310
Helix 108
108
F
135 146Right-handed alpha
Helix 109
109
F
175 191Right-handed alpha
Helix 110
110
F
193 197Right-handed 310
Helix 111
111
F
207 223Right-handed alpha
Helix 112
112
F
247 252Right-handed 310
Helix 113
113
F
253 258Right-handed alpha
Helix 114
114
F
281 293Right-handed alpha
Helix 115
115
F
294 296Right-handed 310
Helix 116
116
F
344 359Right-handed alpha
Helix 117
117
F
365 368Right-handed 310
Helix 118
118
F
382 385Right-handed 310
Helix 119
119
F
386 397Right-handed alpha
Helix 120
120
F
405 417Right-handed alpha
Helix 121
121
F
429 433Right-handed 310
Helix 122
122
F
442 466Right-handed alpha
Helix 123
123
F
467 471Right-handed 310
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There are 12 sheets in PDB entry 1T8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 120first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
169 170parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
299 302parallel
Strand 7
A
420 428parallel
Strand 8
A
318 327anti-parallel
Strand 9
A
370 378parallel
Strand 10
A
399 403parallel
Strand 11
A
305 308anti-parallel
Strand 12
A
420 428parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 120first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
169 170parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
262 267anti-parallel
Strand 4
B
273 277anti-parallel
Strand 5
B
200 204parallel
Strand 6
B
299 302parallel
Strand 7
B
420 428parallel
Strand 8
B
318 327anti-parallel
Strand 9
B
370 378parallel
Strand 10
B
399 403parallel
Strand 11
B
305 308anti-parallel
Strand 12
B
420 428parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 120first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
169 170parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 240first strand
Strand 2
C
230 233anti-parallel
Strand 3
C
262 265anti-parallel
Strand 4
C
273 276anti-parallel
Strand 5
C
200 203parallel
Strand 6
C
299 302parallel
Strand 7
C
420 428parallel
Strand 8
C
318 327anti-parallel
Strand 9
C
370 378parallel
Strand 10
C
399 403parallel
Strand 11
C
305 308anti-parallel
Strand 12
C
420 428parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 120first strand
Strand 2
D
53 61anti-parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
169 170parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 240first strand
Strand 2
D
228 233anti-parallel
Strand 3
D
262 267anti-parallel
Strand 4
D
273 277anti-parallel
Strand 5
D
200 204parallel
Strand 6
D
299 302parallel
Strand 7
D
420 428parallel
Strand 8
D
318 327anti-parallel
Strand 9
D
370 378parallel
Strand 10
D
399 403parallel
Strand 11
D
305 308anti-parallel
Strand 12
D
420 428parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 120first strand
Strand 2
E
53 61anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
169 170parallel
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There are 12 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 240first strand
Strand 2
E
228 233anti-parallel
Strand 3
E
262 267anti-parallel
Strand 4
E
273 277anti-parallel
Strand 5
E
200 204parallel
Strand 6
E
299 302parallel
Strand 7
E
420 428parallel
Strand 8
E
318 327anti-parallel
Strand 9
E
370 378parallel
Strand 10
E
399 403parallel
Strand 11
E
305 308anti-parallel
Strand 12
E
420 428parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 120first strand
Strand 2
F
53 61anti-parallel
Strand 3
F
81 86anti-parallel
Strand 4
F
169 170parallel
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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 240first strand
Strand 2
F
228 233anti-parallel
Strand 3
F
262 267anti-parallel
Strand 4
F
273 277anti-parallel
Strand 5
F
200 204parallel
Strand 6
F
299 302parallel
Strand 7
F
420 428parallel
Strand 8
F
318 327anti-parallel
Strand 9
F
370 378parallel
Strand 10
F
399 403parallel
Strand 11
F
305 308anti-parallel
Strand 12
F
420 428parallel
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