Analysis of interatomic Contacts of Structural Units in PDB entry:
1T98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T98 entry

There are 2 chains in PDB entry 1T98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8VAL 281
B
 SER 5VAL 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1T98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
48 63Right-handed alpha
Helix 4
4
A
69 84Right-handed alpha
Helix 5
5
A
104 116Right-handed alpha
Helix 6
6
A
121 145Right-handed alpha
Helix 7
7
A
148 156Right-handed alpha
Helix 8
8
A
156 163Right-handed alpha
Helix 9
9
A
163 196Right-handed alpha
Helix 10
10
A
196 242Right-handed alpha
Helix 11
11
A
246 280Right-handed alpha
Helix 12
12
B
6 19Right-handed alpha
Helix 13
13
B
25 39Right-handed alpha
Helix 14
14
B
48 63Right-handed alpha
Helix 15
15
B
66 68Right-handed 310
Helix 16
16
B
69 84Right-handed alpha
Helix 17
17
B
104 116Right-handed alpha
Helix 18
18
B
121 145Right-handed alpha
Helix 19
19
B
148 156Right-handed alpha
Helix 20
20
B
156 163Right-handed alpha
Helix 21
21
B
163 193Right-handed alpha
Helix 22
22
B
201 239Right-handed alpha
Helix 23
23
B
246 280Right-handed alpha
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There are 3 sheets in PDB entry 1T98. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
B
22 24anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
101 103anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
101 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il