Analysis of interatomic Contacts of Structural Units in PDB entry:
1T9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T9H entry

There is 1 chain in PDB entry 1T9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -7TYR 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1T9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 106Right-handed alpha
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
123 141Right-handed alpha
Helix 4
4
A
148 153Right-handed alpha
Helix 5
5
A
158 163Right-handed 310
Helix 6
6
A
172 185Right-handed alpha
Helix 7
7
A
234 239Right-handed alpha
Helix 8
8
A
242 249Right-handed alpha
Helix 9
9
A
250 252Right-handed 310
Helix 10
10
A
265 273Right-handed alpha
Helix 11
11
A
277 293Right-handed alpha
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There are 3 sheets in PDB entry 1T9H. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
58 63parallel
Strand 5
A
47 51anti-parallel
Strand 6
A
3 10anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
75 76anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
110 116parallel
Strand 3
A
80 86parallel
Strand 4
A
166 171parallel
Strand 5
A
217 220parallel
Strand 6
A
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il