Analysis of interatomic Contacts of Structural Units in PDB entry:
1T9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T9M entry

There are 2 chains in PDB entry 1T9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11PRO 214
B
 LEU 11PRO 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1T9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 44Right-handed alpha
Helix 2
2
A
85 94Right-handed alpha
Helix 3
3
A
120 131Right-handed alpha
Helix 4
4
A
132 134Right-handed 310
Helix 5
5
A
135 142Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
B
28 43Right-handed alpha
Helix 8
8
B
85 94Right-handed alpha
Helix 9
9
B
120 131Right-handed alpha
Helix 10
10
B
132 134Right-handed 310
Helix 11
11
B
135 142Right-handed alpha
Helix 12
12
B
150 163Right-handed alpha
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There are 4 sheets in PDB entry 1T9M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
108 118anti-parallel
Strand 5
A
174 191anti-parallel
Strand 6
A
76 82anti-parallel
Strand 7
A
71 72anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
108 118anti-parallel
Strand 5
A
174 191anti-parallel
Strand 6
A
194 202anti-parallel
Strand 7
A
207 212anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
50 56anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
108 118anti-parallel
Strand 5
B
174 188anti-parallel
Strand 6
B
76 82anti-parallel
Strand 7
B
71 72anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
50 56anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
108 118anti-parallel
Strand 5
B
174 188anti-parallel
Strand 6
B
196 203anti-parallel
Strand 7
B
206 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il