Analysis of interatomic Contacts of Structural Units in PDB entry:
1T9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T9V entry

There is 1 chain in PDB entry 1T9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1T9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 28Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
61 67Right-handed alpha
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
152 159Right-handed alpha
Helix 7
7
A
162 169Right-handed alpha
Helix 8
8
A
170 172Right-handed 310
Helix 9
9
A
190 195Right-handed alpha
Helix 10
10
A
199 211Right-handed alpha
Helix 11
11
A
242 247Right-handed alpha
Helix 12
12
A
262 265Right-handed alpha
Helix 13
13
A
298 305Right-handed alpha
Helix 14
14
A
305 314Right-handed alpha
Helix 15
15
A
315 317Right-handed 310
Helix 16
16
A
329 339Right-handed alpha
Helix 17
17
A
340 359Right-handed alpha
Helix 18
18
A
366 372Right-handed alpha
Helix 19
19
A
372 385Right-handed alpha
Helix 20
20
A
392 397Right-handed alpha
Helix 21
21
A
398 423Right-handed alpha
Helix 22
22
A
427 446Right-handed alpha
Helix 23
23
A
463 468Right-handed alpha
Helix 24
24
A
472 487Right-handed alpha
Helix 25
25
A
488 496Right-handed alpha
Helix 26
26
A
513 525Right-handed alpha
Helix 27
27
A
528 537Right-handed alpha
Helix 28
28
A
538 558Right-handed alpha
Helix 29
29
A
583 600Right-handed alpha
Helix 30
30
A
643 656Right-handed alpha
Helix 31
31
A
691 707Right-handed alpha
Helix 32
32
A
732 740Right-handed alpha
Helix 33
33
A
742 755Right-handed alpha
Helix 34
34
A
776 780Right-handed 310
Helix 35
35
A
782 788Right-handed 310
Helix 36
36
A
837 849Right-handed alpha
Helix 37
37
A
871 888Right-handed alpha
Helix 38
38
A
896 902Right-handed alpha
Helix 39
39
A
904 919Right-handed alpha
Helix 40
40
A
924 954Right-handed alpha
Helix 41
41
A
963 969Right-handed alpha
Helix 42
42
A
971 991Right-handed alpha
Helix 43
43
A
998 1013Right-handed alpha
Helix 44
44
A
1025 1033Right-handed alpha
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There are 7 sheets in PDB entry 1T9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 827anti-parallel
Strand 7
A
682 685anti-parallel
Strand 8
A
856 857anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
285 292anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
321 324anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
285 292anti-parallel
Strand 3
A
278 280anti-parallel
Strand 4
A
606 613anti-parallel
Strand 5
A
624 631anti-parallel
Strand 6
A
573 577anti-parallel
Strand 7
A
662 663anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 773parallel
Strand 4
A
757 764anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 729first strand
Strand 2
A
807 811anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il