Analysis of interatomic Contacts of Structural Units in PDB entry:
1TBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TBP entry

There are 2 chains in PDB entry 1TBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 61MET 240
B
 MET 61MET 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1TBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 90Right-handed alpha
Helix 2
2
A
128 143Right-handed alpha
Helix 3
3
A
171 179Right-handed alpha
Helix 4
4
A
220 237Right-handed alpha
Helix 5
5
B
81 87Right-handed alpha
Helix 6
6
B
128 147Right-handed alpha
Helix 7
7
B
171 179Right-handed alpha
Helix 8
8
B
219 235Right-handed alpha
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There are 2 sheets in PDB entry 1TBP. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
111 115anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
66 75anti-parallel
Strand 5
A
156 165anti-parallel
Strand 6
A
211 217anti-parallel
Strand 7
A
202 206anti-parallel
Strand 8
A
193 197anti-parallel
Strand 9
A
183 184anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
112 115anti-parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
66 75anti-parallel
Strand 5
B
153 165anti-parallel
Strand 6
B
211 215anti-parallel
Strand 7
B
202 206anti-parallel
Strand 8
B
193 197anti-parallel
Strand 9
B
183 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il