Analysis of interatomic Contacts of Structural Units in PDB entry:
1TDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TDJ entry

There is 1 chain in PDB entry 1TDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1TDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
38 43Right-handed alpha
Helix 4
4
A
53 55Right-handed 310
Helix 5
5
A
63 71Right-handed alpha
Helix 6
6
A
91 100Right-handed alpha
Helix 7
7
A
115 124Right-handed alpha
Helix 8
8
A
135 149Right-handed alpha
Helix 9
9
A
160 176Right-handed alpha
Helix 10
10
A
191 203Right-handed alpha
Helix 11
11
A
219 226Right-handed alpha
Helix 12
12
A
250 255Right-handed alpha
Helix 13
13
A
267 280Right-handed alpha
Helix 14
14
A
287 302Right-handed alpha
Helix 15
15
A
321 333Right-handed 310
Helix 16
16
A
353 359Right-handed alpha
Helix 17
17
A
388 400Right-handed 310
Helix 18
18
A
413 417Right-handed alpha
Helix 19
19
A
419 421Right-handed 310
Helix 20
20
A
446 454Right-handed alpha
Helix 21
21
A
506 511Right-handed alpha
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There are 4 sheets in PDB entry 1TDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
309 313parallel
Strand 4
A
182 186parallel
Strand 5
A
208 214parallel
Strand 6
A
261 265parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
105 108parallel
Strand 3
A
127 129parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
378 384anti-parallel
Strand 4
A
363 368anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
434 439anti-parallel
Strand 3
A
475 479anti-parallel
Strand 4
A
462 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il