Analysis of interatomic Contacts of Structural Units in PDB entry:
1TF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1TF7 entry

There are 6 chains in PDB entry 1TF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 14	ILE 497
B	GLU 14	ILE 497
C	GLU 14	ILE 497
D	GLU 14	ILE 497
E	GLU 14	ILE 497
F	GLU 14	ILE 497

There are101 helices in PDB entry 1TF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	32	Right-handed alpha
Helix 2	2	A	51	68	Right-handed alpha
Helix 3	3	A	79	88	Right-handed alpha
Helix 4	4	A	89	91	Right-handed 310
Helix 5	5	A	93	100	Right-handed alpha
Helix 6	6	A	120	138	Right-handed alpha
Helix 7	7	A	156	175	Right-handed alpha
Helix 8	8	A	196	201	Right-handed alpha
Helix 9	9	A	267	274	Right-handed alpha
Helix 10	10	A	293	307	Right-handed alpha
Helix 11	11	A	320	330	Right-handed alpha
Helix 12	12	A	334	341	Right-handed alpha
Helix 13	13	A	350	354	Right-handed 310
Helix 14	14	A	355	369	Right-handed alpha
Helix 15	15	A	379	384	Right-handed alpha
Helix 16	16	A	388	406	Right-handed alpha
Helix 17	17	B	27	32	Right-handed alpha
Helix 18	18	B	51	68	Right-handed alpha
Helix 19	19	B	79	88	Right-handed alpha
Helix 20	20	B	89	91	Right-handed 310
Helix 21	21	B	93	100	Right-handed alpha
Helix 22	22	B	118	137	Right-handed alpha
Helix 23	23	B	146	150	Right-handed 310
Helix 24	24	B	156	174	Right-handed alpha
Helix 25	25	B	196	201	Right-handed alpha
Helix 26	26	B	267	274	Right-handed alpha
Helix 27	27	B	293	308	Right-handed alpha
Helix 28	28	B	320	330	Right-handed alpha
Helix 29	29	B	334	341	Right-handed alpha
Helix 30	30	B	350	354	Right-handed 310
Helix 31	31	B	355	369	Right-handed alpha
Helix 32	32	B	379	384	Right-handed alpha
Helix 33	33	B	388	406	Right-handed alpha
Helix 34	34	B	430	434	Right-handed 310
Helix 35	35	C	27	32	Right-handed alpha
Helix 36	36	C	51	68	Right-handed alpha
Helix 37	37	C	79	88	Right-handed alpha
Helix 38	38	C	89	91	Right-handed 310
Helix 39	39	C	93	100	Right-handed alpha
Helix 40	40	C	121	138	Right-handed alpha
Helix 41	41	C	146	150	Right-handed 310
Helix 42	42	C	156	174	Right-handed alpha
Helix 43	43	C	196	201	Right-handed alpha
Helix 44	44	C	267	274	Right-handed alpha
Helix 45	45	C	293	308	Right-handed alpha
Helix 46	46	C	320	331	Right-handed alpha
Helix 47	47	C	334	341	Right-handed alpha
Helix 48	48	C	350	354	Right-handed 310
Helix 49	49	C	355	369	Right-handed alpha
Helix 50	50	C	388	405	Right-handed alpha
Helix 51	51	C	430	434	Right-handed 310
Helix 52	52	D	27	32	Right-handed alpha
Helix 53	53	D	51	68	Right-handed alpha
Helix 54	54	D	79	88	Right-handed alpha
Helix 55	55	D	89	91	Right-handed 310
Helix 56	56	D	93	100	Right-handed alpha
Helix 57	57	D	121	138	Right-handed alpha
Helix 58	58	D	156	175	Right-handed alpha
Helix 59	59	D	196	201	Right-handed alpha
Helix 60	60	D	267	274	Right-handed alpha
Helix 61	61	D	293	308	Right-handed alpha
Helix 62	62	D	320	330	Right-handed alpha
Helix 63	63	D	334	341	Right-handed alpha
Helix 64	64	D	350	354	Right-handed 310
Helix 65	65	D	355	369	Right-handed alpha
Helix 66	66	D	379	384	Right-handed alpha
Helix 67	67	D	388	406	Right-handed alpha
Helix 68	68	D	430	434	Right-handed 310
Helix 69	69	E	27	32	Right-handed alpha
Helix 70	70	E	51	68	Right-handed alpha
Helix 71	71	E	79	88	Right-handed alpha
Helix 72	72	E	89	91	Right-handed 310
Helix 73	73	E	93	100	Right-handed alpha
Helix 74	74	E	121	138	Right-handed alpha
Helix 75	75	E	156	175	Right-handed alpha
Helix 76	76	E	196	201	Right-handed alpha
Helix 77	77	E	267	274	Right-handed alpha
Helix 78	78	E	293	307	Right-handed alpha
Helix 79	79	E	320	330	Right-handed alpha
Helix 80	80	E	334	341	Right-handed alpha
Helix 81	81	E	350	354	Right-handed 310
Helix 82	82	E	355	369	Right-handed alpha
Helix 83	83	E	379	384	Right-handed alpha
Helix 84	84	E	388	406	Right-handed alpha
Helix 85	85	E	430	434	Right-handed 310
Helix 86	86	F	27	32	Right-handed alpha
Helix 87	87	F	51	68	Right-handed alpha
Helix 88	88	F	79	88	Right-handed alpha
Helix 89	89	F	89	91	Right-handed 310
Helix 90	90	F	93	100	Right-handed alpha
Helix 91	91	F	120	138	Right-handed alpha
Helix 92	92	F	156	175	Right-handed alpha
Helix 93	93	F	196	201	Right-handed alpha
Helix 94	94	F	267	274	Right-handed alpha
Helix 95	95	F	293	308	Right-handed alpha
Helix 96	96	F	320	331	Right-handed alpha
Helix 97	97	F	334	341	Right-handed alpha
Helix 98	98	F	350	354	Right-handed 310
Helix 99	99	F	355	369	Right-handed alpha
Helix 100	100	F	379	384	Right-handed alpha
Helix 101	101	F	388	406	Right-handed alpha

There are 30 sheets in PDB entry 1TF7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	36	37	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	71	75	parallel
Strand 3	A	141	145	parallel
Strand 4	A	177	183	parallel
Strand 5	A	41	46	parallel
Strand 6	A	203	210	parallel
Strand 7	A	217	225	anti-parallel
Strand 8	A	234	240	anti-parallel
Strand 9	A	243	246	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	278	279	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	312	316	parallel
Strand 3	A	374	378	parallel
Strand 4	A	409	415	parallel
Strand 5	A	283	288	parallel
Strand 6	A	436	445	parallel
Strand 7	A	448	458	anti-parallel
Strand 8	A	468	472	anti-parallel
Strand 9	A	477	482	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	495	496	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	36	37	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	71	75	parallel
Strand 3	B	141	145	parallel
Strand 4	B	177	183	parallel
Strand 5	B	41	46	parallel
Strand 6	B	203	210	parallel
Strand 7	B	217	225	anti-parallel
Strand 8	B	234	240	anti-parallel
Strand 9	B	243	246	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	278	279	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	312	316	parallel
Strand 3	B	374	378	parallel
Strand 4	B	409	415	parallel
Strand 5	B	283	288	parallel
Strand 6	B	436	440	parallel
Strand 7	B	453	458	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	449	450	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	472	first strand
Strand 2	B	477	482	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	495	496	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	36	37	anti-parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	71	75	parallel
Strand 3	C	141	145	parallel
Strand 4	C	177	183	parallel
Strand 5	C	41	46	parallel
Strand 6	C	203	210	parallel
Strand 7	C	217	225	anti-parallel
Strand 8	C	234	240	anti-parallel
Strand 9	C	243	246	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	278	279	anti-parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	312	316	parallel
Strand 3	C	374	378	parallel
Strand 4	C	409	415	parallel
Strand 5	C	283	288	parallel
Strand 6	C	436	445	parallel
Strand 7	C	448	458	anti-parallel
Strand 8	C	468	472	anti-parallel
Strand 9	C	477	482	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	495	496	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	36	37	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	107	first strand
Strand 2	D	71	75	parallel
Strand 3	D	141	145	parallel
Strand 4	D	177	183	parallel
Strand 5	D	41	46	parallel
Strand 6	D	203	210	parallel
Strand 7	D	217	225	anti-parallel
Strand 8	D	234	240	anti-parallel
Strand 9	D	243	246	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	278	279	anti-parallel

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There are 9 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	312	316	parallel
Strand 3	D	374	378	parallel
Strand 4	D	409	415	parallel
Strand 5	D	283	288	parallel
Strand 6	D	436	444	parallel
Strand 7	D	449	458	anti-parallel
Strand 8	D	468	472	anti-parallel
Strand 9	D	477	482	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	36	37	anti-parallel

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There are 9 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	71	75	parallel
Strand 3	E	141	145	parallel
Strand 4	E	177	183	parallel
Strand 5	E	41	46	parallel
Strand 6	E	203	210	parallel
Strand 7	E	217	225	anti-parallel
Strand 8	E	234	240	anti-parallel
Strand 9	E	243	246	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	263	first strand
Strand 2	E	278	279	anti-parallel

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There are 9 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	346	first strand
Strand 2	E	312	316	parallel
Strand 3	E	374	378	parallel
Strand 4	E	409	415	parallel
Strand 5	E	283	288	parallel
Strand 6	E	436	444	parallel
Strand 7	E	449	458	anti-parallel
Strand 8	E	468	472	anti-parallel
Strand 9	E	477	479	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	36	37	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	107	first strand
Strand 2	F	71	75	parallel
Strand 3	F	141	145	parallel
Strand 4	F	177	183	parallel
Strand 5	F	41	46	parallel
Strand 6	F	203	210	parallel
Strand 7	F	217	225	anti-parallel
Strand 8	F	234	240	anti-parallel
Strand 9	F	243	246	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	278	279	anti-parallel

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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	346	first strand
Strand 2	F	312	316	parallel
Strand 3	F	374	378	parallel
Strand 4	F	409	415	parallel
Strand 5	F	283	288	parallel
Strand 6	F	436	444	parallel
Strand 7	F	449	458	anti-parallel
Strand 8	F	467	472	anti-parallel
Strand 9	F	477	482	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	486	487	first strand
Strand 2	F	495	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1TF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
1TF7