Analysis of interatomic Contacts of Structural Units in PDB entry:
1TG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TG8 entry

There is 1 chain in PDB entry 1TG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1TG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 86Right-handed 310
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
192 194Right-handed 310
Helix 4
4
A
210 215Right-handed alpha
Helix 5
5
A
233 236Right-handed 310
Helix 6
6
A
256 264Right-handed alpha
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There are 8 sheets in PDB entry 1TG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
30 34parallel
Strand 3
A
41 50anti-parallel
Strand 4
A
135 143anti-parallel
Strand 5
A
160 164anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
171 175anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 128anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
204 209anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 128anti-parallel
Strand 3
A
55 72anti-parallel
Strand 4
A
220 222anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
249 252anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
333 334parallel
Strand 3
A
357 358anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
313 314anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
365 370anti-parallel
Strand 4
A
347 351anti-parallel
Strand 5
A
337 340anti-parallel
Strand 6
A
374 380anti-parallel
Strand 7
A
387 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il