Analysis of interatomic Contacts of Structural Units in PDB entry:
1TIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TIM entry

There are 2 chains in PDB entry 1TIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1HIS 248
B
 ALA 1HIS 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1TIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA
A
17 31Right-handed alpha
Helix 2
AB
A
44 55Right-handed alpha
Helix 3
AC
A
79 87Right-handed alpha
Helix 4
AD1
A
95 102Right-handed alpha
Helix 5
AD2
A
105 120Right-handed alpha
Helix 6
AE1
A
130 137Right-handed alpha
Helix 7
AE2
A
138 154Right-handed alpha
Helix 8
AF1
A
177 196Right-handed alpha
Helix 9
AF2
A
197 204Right-handed alpha
Helix 10
AG
A
213 223Right-handed alpha
Helix 11
AH1
A
232 236Right-handed 310
Helix 12
AH2
A
237 246Right-handed alpha
Helix 13
BA
B
17 31Right-handed alpha
Helix 14
BB
B
44 55Right-handed alpha
Helix 15
BC
B
79 87Right-handed alpha
Helix 16
BD1
B
95 102Right-handed alpha
Helix 17
BD2
B
105 120Right-handed alpha
Helix 18
BE1
B
130 137Right-handed alpha
Helix 19
BE2
B
138 154Right-handed alpha
Helix 20
BF1
B
177 196Right-handed alpha
Helix 21
BF2
B
197 204Right-handed alpha
Helix 22
BG
B
213 223Right-handed alpha
Helix 23
BH1
B
232 236Right-handed 310
Helix 24
BH2
B
237 246Right-handed alpha
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There are 2 sheets in PDB entry 1TIM. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
36 42parallel
Strand 3
A
60 63parallel
Strand 4
A
89 93parallel
Strand 5
A
122 129parallel
Strand 6
A
159 167parallel
Strand 7
A
205 209parallel
Strand 8
A
227 231parallel
Strand 9
A
6 12parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 12first strand
Strand 2
B
36 42parallel
Strand 3
B
60 63parallel
Strand 4
B
89 93parallel
Strand 5
B
122 129parallel
Strand 6
B
159 167parallel
Strand 7
B
205 209parallel
Strand 8
B
227 231parallel
Strand 9
B
6 12parallel
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