Analysis of interatomic Contacts of Structural Units in PDB entry:
1TIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TIP entry

There are 4 chains in PDB entry 1TIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 8
A
 GLY 10VAL 191
B
 MET 1ARG 8
B
 GLY 10VAL 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1TIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 16Right-handed alpha
Helix 2
2
A
28 44Right-handed alpha
Helix 3
3
A
57 66Right-handed alpha
Helix 4
4
A
74 76Right-handed 310
Helix 5
5
A
82 84Right-handed 310
Helix 6
6
A
89 95Right-handed alpha
Helix 7
7
A
97 105Right-handed alpha
Helix 8
8
A
118 133Right-handed alpha
Helix 9
9
A
144 154Right-handed alpha
Helix 10
10
A
159 164Right-handed alpha
Helix 11
11
B
13 16Right-handed alpha
Helix 12
12
B
28 44Right-handed alpha
Helix 13
13
B
57 65Right-handed alpha
Helix 14
14
B
74 76Right-handed 310
Helix 15
15
B
82 84Right-handed 310
Helix 16
16
B
89 95Right-handed alpha
Helix 17
17
B
97 106Right-handed alpha
Helix 18
18
B
118 124Right-handed alpha
Helix 19
19
B
126 134Right-handed alpha
Helix 20
20
B
144 154Right-handed alpha
Helix 21
21
B
159 164Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1TIP. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 188first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
4 7anti-parallel
Strand 4
A
138 141parallel
Strand 5
A
50 54parallel
Strand 6
A
71 73parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 188first strand
Strand 2
B
171 177anti-parallel
Strand 3
B
4 7anti-parallel
Strand 4
B
138 141parallel
Strand 5
B
50 52parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il