Analysis of interatomic Contacts of Structural Units in PDB entry:
1TJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TJ7 entry

There are 2 chains in PDB entry 1TJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLY 457
B
 ARG 7GLY 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 1TJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
29 47Right-handed alpha
Helix 4
4
A
51 72Right-handed alpha
Helix 5
5
A
73 79Right-handed 310
Helix 6
6
A
83 97Right-handed alpha
Helix 7
7
A
98 103Right-handed 310
Helix 8
8
A
108 145Right-handed alpha
Helix 9
9
A
165 191Right-handed alpha
Helix 10
10
A
208 217Right-handed alpha
Helix 11
11
A
224 231Right-handed alpha
Helix 12
12
A
232 260Right-handed alpha
Helix 13
13
A
270 274Right-handed 310
Helix 14
14
A
286 295Right-handed alpha
Helix 15
15
A
295 311Right-handed alpha
Helix 16
16
A
318 322Right-handed 310
Helix 17
17
A
323 347Right-handed alpha
Helix 18
18
A
352 361Right-handed alpha
Helix 19
19
A
366 377Right-handed alpha
Helix 20
20
A
380 399Right-handed alpha
Helix 21
21
A
401 405Right-handed 310
Helix 22
22
A
406 411Right-handed alpha
Helix 23
23
A
420 425Right-handed alpha
Helix 24
24
A
426 433Right-handed alpha
Helix 25
25
A
441 457Right-handed alpha
Helix 26
26
B
7 21Right-handed alpha
Helix 27
27
B
22 27Right-handed alpha
Helix 28
28
B
29 47Right-handed alpha
Helix 29
29
B
51 72Right-handed alpha
Helix 30
30
B
73 79Right-handed 310
Helix 31
31
B
83 97Right-handed alpha
Helix 32
32
B
98 103Right-handed alpha
Helix 33
33
B
108 146Right-handed alpha
Helix 34
34
B
165 191Right-handed alpha
Helix 35
35
B
208 217Right-handed alpha
Helix 36
36
B
224 231Right-handed alpha
Helix 37
37
B
232 260Right-handed alpha
Helix 38
38
B
270 274Right-handed 310
Helix 39
39
B
286 295Right-handed alpha
Helix 40
40
B
295 311Right-handed alpha
Helix 41
41
B
318 324Right-handed 310
Helix 42
42
B
325 349Right-handed alpha
Helix 43
43
B
352 362Right-handed alpha
Helix 44
44
B
365 377Right-handed alpha
Helix 45
45
B
380 399Right-handed alpha
Helix 46
46
B
401 405Right-handed 310
Helix 47
47
B
406 411Right-handed alpha
Helix 48
48
B
420 425Right-handed alpha
Helix 49
49
B
426 434Right-handed alpha
Helix 50
50
B
441 457Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1TJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
158 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 155first strand
Strand 2
B
158 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
220 221parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
350 351anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il