Analysis of interatomic Contacts of Structural Units in PDB entry:
1TJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TJR entry

There are 2 chains in PDB entry 1TJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 86PRO 346
B
 SER 86PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1TJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
88 99Right-handed alpha
Helix 2
2
A
114 129Right-handed alpha
Helix 3
3
A
146 159Right-handed alpha
Helix 4
4
A
162 174Right-handed alpha
Helix 5
5
A
175 177Right-handed 310
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
195 201Right-handed alpha
Helix 8
8
A
215 226Right-handed alpha
Helix 9
9
A
239 250Right-handed alpha
Helix 10
10
A
272 284Right-handed alpha
Helix 11
11
A
296 306Right-handed alpha
Helix 12
12
A
314 322Right-handed alpha
Helix 13
13
A
326 344Right-handed alpha
Helix 14
14
B
88 99Right-handed alpha
Helix 15
15
B
114 127Right-handed alpha
Helix 16
16
B
146 159Right-handed alpha
Helix 17
17
B
162 174Right-handed alpha
Helix 18
18
B
175 177Right-handed 310
Helix 19
19
B
195 200Right-handed alpha
Helix 20
20
B
212 225Right-handed alpha
Helix 21
21
B
239 250Right-handed alpha
Helix 22
22
B
272 282Right-handed alpha
Helix 23
23
B
296 304Right-handed alpha
Helix 24
24
B
314 323Right-handed alpha
Helix 25
25
B
326 344Right-handed alpha
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There are 2 sheets in PDB entry 1TJR. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
205 207parallel
Strand 3
A
181 184parallel
Strand 4
A
133 136parallel
Strand 5
A
103 109parallel
Strand 6
A
310 313parallel
Strand 7
A
288 291parallel
Strand 8
A
254 257parallel
Strand 9
A
233 234parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
133 136parallel
Strand 3
B
181 184parallel
Strand 4
B
205 207parallel
Strand 5
B
229 234parallel
Strand 6
B
254 257parallel
Strand 7
B
288 291parallel
Strand 8
B
310 313parallel
Strand 9
B
103 109parallel
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