Analysis of interatomic Contacts of Structural Units in PDB entry:
1TKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TKD entry

There are 5 chains in PDB entry 1TKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 C 807 A 821
T
 C 853 A 854
T
 T 856 T 871
A
 MET 1HIS 704
B
 LYS 3LEU 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1TKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
38 52Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
84 86Right-handed 310
Helix 6
6
A
91 99Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
126 149Right-handed alpha
Helix 9
9
A
157 161Right-handed 310
Helix 10
10
A
164 187Right-handed alpha
Helix 11
11
A
202 210Right-handed alpha
Helix 12
12
A
211 231Right-handed alpha
Helix 13
13
A
235 261Right-handed alpha
Helix 14
14
A
338 348Right-handed alpha
Helix 15
15
A
365 372Right-handed alpha
Helix 16
16
A
376 400Right-handed alpha
Helix 17
17
A
405 410Right-handed alpha
Helix 18
18
A
447 454Right-handed alpha
Helix 19
19
A
456 460Right-handed 310
Helix 20
20
A
478 493Right-handed alpha
Helix 21
21
A
494 500Right-handed alpha
Helix 22
22
A
504 514Right-handed alpha
Helix 23
23
A
517 530Right-handed alpha
Helix 24
24
A
533 542Right-handed alpha
Helix 25
25
A
544 559Right-handed alpha
Helix 26
26
A
560 573Right-handed alpha
Helix 27
27
A
608 636Right-handed alpha
Helix 28
28
A
662 684Right-handed alpha
Helix 29
29
B
8 16Right-handed alpha
Helix 30
30
B
32 49Right-handed alpha
Helix 31
31
B
65 70Right-handed alpha
Helix 32
32
B
95 107Right-handed alpha
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There are 8 sheets in PDB entry 1TKD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
56 58parallel
Strand 5
A
88 90parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
415 416anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
327 332anti-parallel
Strand 3
B
74 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
431 433anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 651first strand
Strand 2
A
655 660anti-parallel
Strand 3
A
470 476anti-parallel
Strand 4
A
692 697anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 579first strand
Strand 2
A
584 588anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
600 602anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
54 59parallel
Strand 3
B
22 28parallel
Strand 4
B
77 82anti-parallel
Strand 5
B
85 91anti-parallel
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