Analysis of interatomic Contacts of Structural Units in PDB entry:
1TLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TLJ entry

There are 2 chains in PDB entry 1TLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4SER 192
B
 VAL 5SER 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1TLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 23Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
30 40Right-handed alpha
Helix 4
4
A
79 89Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
A
162 192Right-handed alpha
Helix 7
7
B
5 20Right-handed alpha
Helix 8
8
B
20 27Right-handed alpha
Helix 9
9
B
30 39Right-handed alpha
Helix 10
10
B
79 88Right-handed alpha
Helix 11
11
B
110 124Right-handed alpha
Helix 12
12
B
162 191Right-handed alpha
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There are 4 sheets in PDB entry 1TLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
130 135anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
148 154anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
130 133anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
148 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il