Analysis of interatomic Contacts of Structural Units in PDB entry:
1TM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TM0 entry

There are 2 chains in PDB entry 1TM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1TYR 332
B
 MSE 1TYR 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1TM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 45Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
90 104Right-handed alpha
Helix 4
4
A
180 182Right-handed 310
Helix 5
5
A
187 203Right-handed alpha
Helix 6
6
A
255 269Right-handed alpha
Helix 7
7
B
33 45Right-handed alpha
Helix 8
8
B
45 53Right-handed alpha
Helix 9
9
B
90 104Right-handed alpha
Helix 10
10
B
180 182Right-handed 310
Helix 11
11
B
187 203Right-handed alpha
Helix 12
12
B
256 267Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1TM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
7 14anti-parallel
Strand 3
A
20 24anti-parallel
Strand 4
A
63 67parallel
Strand 5
A
76 79anti-parallel
Strand 6
A
113 119parallel
Strand 7
A
124 131anti-parallel
Strand 8
A
136 142anti-parallel
Strand 9
A
301 310anti-parallel
Strand 10
A
288 298anti-parallel
Strand 11
A
277 280anti-parallel
Strand 12
A
236 239parallel
Strand 13
A
231 232anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
7 14anti-parallel
Strand 3
A
312 320anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
153 156anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
173 178anti-parallel
Strand 4
A
223 227parallel
Strand 5
A
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
6 14anti-parallel
Strand 3
B
20 24anti-parallel
Strand 4
B
63 67parallel
Strand 5
B
76 79anti-parallel
Strand 6
B
113 119parallel
Strand 7
B
124 131anti-parallel
Strand 8
B
136 142anti-parallel
Strand 9
B
302 310anti-parallel
Strand 10
B
289 297anti-parallel
Strand 11
B
277 280anti-parallel
Strand 12
B
236 239parallel
Strand 13
B
231 232anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
6 14anti-parallel
Strand 3
B
312 321anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
162 169anti-parallel
Strand 3
B
153 156anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
162 169anti-parallel
Strand 3
B
173 178anti-parallel
Strand 4
B
223 227parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il