Analysis of interatomic Contacts of Structural Units in PDB entry:
1TM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TM2 entry

There is 1 chain in PDB entry 1TM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1TM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 57Right-handed alpha
Helix 2
2
A
69 83Right-handed alpha
Helix 3
3
A
98 108Right-handed alpha
Helix 4
4
A
120 124Right-handed 310
Helix 5
5
A
132 148Right-handed alpha
Helix 6
6
A
164 182Right-handed alpha
Helix 7
7
A
196 211Right-handed alpha
Helix 8
8
A
223 235Right-handed alpha
Helix 9
9
A
247 257Right-handed alpha
Helix 10
10
A
267 284Right-handed alpha
Helix 11
11
A
306 311Right-handed 310
Helix 12
12
A
334 338Right-handed 310
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There are 3 sheets in PDB entry 1TM2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
29 33parallel
Strand 3
A
87 90parallel
Strand 4
A
111 115parallel
Strand 5
A
126 129parallel
Strand 6
A
320 323parallel
Strand 7
A
300 305anti-parallel
Strand 8
A
293 296anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
154 159parallel
Strand 3
A
216 219parallel
Strand 4
A
241 244parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
328 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il