Analysis of interatomic Contacts of Structural Units in PDB entry:
1TME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TME entry

There are 4 chains in PDB entry 1TME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLY 1VAL 256
2
 ASP 12ALA 266
3
 SER 1GLN 232
4
 SER 15SER 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1TME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
4 8Right-handed 310
Helix 2
2
1
32 38Right-handed alpha
Helix 3
3
1
111 117Right-handed alpha
Helix 4
4
1
163 167Right-handed 310
Helix 5
5
2
36 38Right-handed 310
Helix 6
6
2
56 60Right-handed 310
Helix 7
7
2
85 89Right-handed 310
Helix 8
8
2
90 92Right-handed 310
Helix 9
9
2
93 101Right-handed alpha
Helix 10
10
2
182 189Right-handed 310
Helix 11
11
2
216 219Right-handed 310
Helix 12
12
3
43 50Right-handed alpha
Helix 13
13
3
93 100Right-handed alpha
Helix 14
14
3
139 144Right-handed alpha
Helix 15
15
4
27 32Right-handed alpha
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There are 14 sheets in PDB entry 1TME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
2 3first strand
Strand 2
3
158 163anti-parallel
Strand 3
3
109 115anti-parallel
Strand 4
3
205 214anti-parallel
Strand 5
3
52 53anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
2 3first strand
Strand 2
3
158 163anti-parallel
Strand 3
3
109 115anti-parallel
Strand 4
3
205 214anti-parallel
Strand 5
3
66 70anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
60 61first strand
Strand 2
1
64 65anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
67 69first strand
Strand 2
1
223 228anti-parallel
Strand 3
1
140 146anti-parallel
Strand 4
1
172 176anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
75 76first strand
Strand 2
1
91 92anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 19first strand
Strand 2
2
22 26anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 34first strand
Strand 2
2
201 206parallel
Strand 3
2
103 115anti-parallel
Strand 4
2
243 259anti-parallel
Strand 5
2
53 54anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 34first strand
Strand 2
2
201 206parallel
Strand 3
2
103 115anti-parallel
Strand 4
2
243 259anti-parallel
Strand 5
2
63 70anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
79 84first strand
Strand 2
2
223 234anti-parallel
Strand 3
2
123 132anti-parallel
Strand 4
2
191 195anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
139 140first strand
Strand 2
2
147 148anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
30 31first strand
Strand 2
4
34 35parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
56 57first strand
Strand 2
3
63 64anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
79 82first strand
Strand 2
3
187 197anti-parallel
Strand 3
3
122 130anti-parallel
Strand 4
3
147 152anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
172 173first strand
Strand 2
3
102 106anti-parallel
Strand 3
3
219 223anti-parallel
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