Analysis of interatomic Contacts of Structural Units in PDB entry:
1TMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TMF entry

There are 4 chains in PDB entry 1TMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLY 1GLU 276
2
 ASP 1GLN 267
3
 SER 1GLN 232
4
 ASN 12LEU 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1TMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
2
10 14Right-handed 310
Helix 2
2
2
56 60Right-handed 310
Helix 3
3
2
93 101Right-handed alpha
Helix 4
4
3
93 98Right-handed alpha
Helix 5
5
3
139 144Right-handed alpha
Helix 6
6
4
26 31Right-handed alpha
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There are 11 sheets in PDB entry 1TMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
45 46first strand
Strand 2
1
234 246anti-parallel
Strand 3
1
124 134anti-parallel
Strand 4
1
185 189anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
45 46first strand
Strand 2
1
234 246anti-parallel
Strand 3
1
124 134anti-parallel
Strand 4
1
198 199anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
67 68first strand
Strand 2
1
225 228anti-parallel
Strand 3
1
145 148anti-parallel
Strand 4
1
174 176anti-parallel
Strand 5
3
14 15anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 19first strand
Strand 2
2
22 26anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
33 34first strand
Strand 2
2
201 206parallel
Strand 3
2
109 115anti-parallel
Strand 4
2
243 252anti-parallel
Strand 5
2
63 70anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
81 84first strand
Strand 2
2
223 231anti-parallel
Strand 3
2
125 131anti-parallel
Strand 4
2
191 194anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
215 216first strand
Strand 2
2
103 106anti-parallel
Strand 3
2
257 259anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
79 81first strand
Strand 2
3
188 197anti-parallel
Strand 3
3
122 129anti-parallel
Strand 4
3
147 148anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
79 81first strand
Strand 2
3
188 197anti-parallel
Strand 3
3
122 129anti-parallel
Strand 4
3
151 152anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
172 173first strand
Strand 2
3
104 106anti-parallel
Strand 3
3
219 221anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
158 161first strand
Strand 2
3
110 115anti-parallel
Strand 3
3
208 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il