Analysis of interatomic Contacts of Structural Units in PDB entry:
1TMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TMH entry

There are 4 chains in PDB entry 1TMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ALA 257
B
 MET 3ALA 257
C
 MET 3ALA 257
D
 MET 3ALA 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 1TMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
45 47Right-handed 310
Helix 3
3
A
48 57Right-handed alpha
Helix 4
4
A
81 89Right-handed alpha
Helix 5
5
A
97 102Right-handed alpha
Helix 6
6
A
107 122Right-handed alpha
Helix 7
7
A
132 139Right-handed alpha
Helix 8
8
A
140 154Right-handed alpha
Helix 9
9
A
157 162Right-handed 310
Helix 10
10
A
170 174Right-handed 310
Helix 11
11
A
181 198Right-handed alpha
Helix 12
12
A
200 207Right-handed alpha
Helix 13
13
A
216 225Right-handed alpha
Helix 14
14
A
235 240Right-handed 310
Helix 15
15
A
241 256Right-handed alpha
Helix 16
16
B
17 32Right-handed alpha
Helix 17
17
B
45 47Right-handed 310
Helix 18
18
B
48 57Right-handed alpha
Helix 19
19
B
81 89Right-handed alpha
Helix 20
20
B
97 102Right-handed alpha
Helix 21
21
B
107 122Right-handed alpha
Helix 22
22
B
132 139Right-handed alpha
Helix 23
23
B
140 157Right-handed alpha
Helix 24
24
B
158 162Right-handed 310
Helix 25
25
B
170 174Right-handed 310
Helix 26
26
B
181 198Right-handed alpha
Helix 27
27
B
200 207Right-handed alpha
Helix 28
28
B
216 225Right-handed alpha
Helix 29
29
B
235 240Right-handed 310
Helix 30
30
B
241 256Right-handed alpha
Helix 31
31
C
17 32Right-handed alpha
Helix 32
32
C
45 47Right-handed 310
Helix 33
33
C
48 57Right-handed alpha
Helix 34
34
C
81 89Right-handed alpha
Helix 35
35
C
97 104Right-handed alpha
Helix 36
36
C
107 122Right-handed alpha
Helix 37
37
C
132 139Right-handed alpha
Helix 38
38
C
140 157Right-handed alpha
Helix 39
39
C
158 162Right-handed 310
Helix 40
40
C
170 174Right-handed 310
Helix 41
41
C
181 198Right-handed alpha
Helix 42
42
C
200 207Right-handed alpha
Helix 43
43
C
216 225Right-handed alpha
Helix 44
44
C
235 240Right-handed 310
Helix 45
45
C
241 256Right-handed alpha
Helix 46
46
D
17 32Right-handed alpha
Helix 47
47
D
45 47Right-handed 310
Helix 48
48
D
48 57Right-handed alpha
Helix 49
49
D
81 89Right-handed alpha
Helix 50
50
D
97 102Right-handed alpha
Helix 51
51
D
107 121Right-handed alpha
Helix 52
52
D
132 138Right-handed alpha
Helix 53
53
D
140 157Right-handed alpha
Helix 54
54
D
158 162Right-handed 310
Helix 55
55
D
170 174Right-handed 310
Helix 56
56
D
181 200Right-handed alpha
Helix 57
57
D
200 207Right-handed alpha
Helix 58
58
D
216 225Right-handed alpha
Helix 59
59
D
235 240Right-handed 310
Helix 60
60
D
241 256Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1TMH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
39 43parallel
Strand 3
A
62 65parallel
Strand 4
A
92 95parallel
Strand 5
A
124 129parallel
Strand 6
A
165 168parallel
Strand 7
A
208 212parallel
Strand 8
A
231 234parallel
Strand 9
A
7 11parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
39 43parallel
Strand 3
B
61 65parallel
Strand 4
B
92 95parallel
Strand 5
B
124 129parallel
Strand 6
B
165 168parallel
Strand 7
B
208 211parallel
Strand 8
B
231 234parallel
Strand 9
B
7 11parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
40 43parallel
Strand 3
C
61 65parallel
Strand 4
C
92 95parallel
Strand 5
C
124 129parallel
Strand 6
C
165 168parallel
Strand 7
C
208 212parallel
Strand 8
C
231 234parallel
Strand 9
C
7 11parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
39 43parallel
Strand 3
D
61 65parallel
Strand 4
D
92 95parallel
Strand 5
D
124 129parallel
Strand 6
D
165 168parallel
Strand 7
D
208 211parallel
Strand 8
D
231 234parallel
Strand 9
D
7 11parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il