Analysis of interatomic Contacts of Structural Units in PDB entry:
1TML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TML entry

There is 1 chain in PDB entry 1TML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1ALA 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1TML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
12 19Right-handed alpha
Helix 2
B
A
26 32Right-handed alpha
Helix 3
C
A
47 64Right-handed alpha
Helix 4
D
A
91 103Right-handed alpha
Helix 5
E
A
127 147Right-handed alpha
Helix 6
F
A
165 174Right-handed alpha
Helix 7
G
A
194 208Right-handed alpha
Helix 8
H
A
276 284Right-handed alpha
Helix 9
D1
A
118 122Right-handed alpha
Helix 10
F1
A
177 180Right-handed alpha
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There are 2 sheets in PDB entry 1TML. Click on sheet of interest to get list of strands forming it: COR, BOR,

There are 9 strands in COR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
67 72parallel
Strand 3
A
111 114parallel
Strand 4
A
152 156parallel
Strand 5
A
183 186parallel
Strand 6
A
214 218parallel
Strand 7
A
252 257parallel
Strand 8
A
243 245anti-parallel
Strand 9
A
4 6anti-parallel
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There are 9 strands in BOR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
67 72parallel
Strand 3
A
111 114parallel
Strand 4
A
152 156parallel
Strand 5
A
183 186parallel
Strand 6
A
214 218parallel
Strand 7
A
252 257parallel
Strand 8
A
243 245anti-parallel
Strand 9
A
38 42anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il