Analysis of interatomic Contacts of Structural Units in PDB entry:
1TMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TMM entry

There are 2 chains in PDB entry 1TMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1TRP 158
B
 THR 201TRP 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1TMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
65 80Right-handed alpha
Helix 3
3
A
117 120Right-handed 310
Helix 4
4
A
121 132Right-handed alpha
Helix 5
5
A
142 150Right-handed alpha
Helix 6
6
B
213 227Right-handed alpha
Helix 7
7
B
265 280Right-handed alpha
Helix 8
8
B
317 320Right-handed 310
Helix 9
9
B
321 332Right-handed alpha
Helix 10
10
B
342 351Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1TMM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
95 101anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
40 42anti-parallel
Strand 4
A
156 157anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 113anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 236first strand
Strand 2
B
253 262anti-parallel
Strand 3
B
202 209anti-parallel
Strand 4
B
295 301anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 236first strand
Strand 2
B
253 262anti-parallel
Strand 3
B
240 242anti-parallel
Strand 4
B
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
312 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il