Analysis of interatomic Contacts of Structural Units in PDB entry:
1TMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TMO entry

There is 1 chain in PDB entry 1TMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ILE 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1TMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 45Right-handed 310
Helix 2
2
A
47 51Right-handed alpha
Helix 3
3
A
64 72Right-handed alpha
Helix 4
4
A
75 77Right-handed 310
Helix 5
5
A
88 105Right-handed alpha
Helix 6
6
A
108 110Right-handed 310
Helix 7
7
A
127 136Right-handed alpha
Helix 8
8
A
153 160Right-handed alpha
Helix 9
9
A
173 179Right-handed alpha
Helix 10
10
A
190 193Right-handed alpha
Helix 11
11
A
204 218Right-handed 310
Helix 12
12
A
232 237Right-handed alpha
Helix 13
13
A
249 262Right-handed alpha
Helix 14
14
A
268 274Right-handed alpha
Helix 15
15
A
278 286Right-handed alpha
Helix 16
16
A
296 303Right-handed alpha
Helix 17
17
A
307 319Right-handed alpha
Helix 18
18
A
329 331Right-handed 310
Helix 19
19
A
337 350Right-handed alpha
Helix 20
20
A
408 416Right-handed 310
Helix 21
21
A
444 447Right-handed alpha
Helix 22
22
A
451 460Right-handed alpha
Helix 23
23
A
473 477Right-handed alpha
Helix 24
24
A
487 489Right-handed 310
Helix 25
25
A
520 530Right-handed alpha
Helix 26
26
A
534 538Right-handed alpha
Helix 27
27
A
543 560Right-handed alpha
Helix 28
28
A
567 573Right-handed alpha
Helix 29
29
A
588 592Right-handed alpha
Helix 30
30
A
611 616Right-handed alpha
Helix 31
31
A
664 669Right-handed alpha
Helix 32
32
A
682 688Right-handed alpha
Helix 33
33
A
738 741Right-handed 310
Helix 34
34
A
752 754Right-handed 310
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There are 9 sheets in PDB entry 1TMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
27 33anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
83 85anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
405 407parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
322 326parallel
Strand 3
A
182 186parallel
Strand 4
A
222 226parallel
Strand 5
A
240 242parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
428 430anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
463 468parallel
Strand 3
A
480 483parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
503 507anti-parallel
Strand 3
A
575 577anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 648first strand
Strand 2
A
719 721parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 680first strand
Strand 2
A
703 711parallel
Strand 3
A
695 700anti-parallel
Strand 4
A
776 779anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il