Analysis of interatomic Contacts of Structural Units in PDB entry:
1TMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TMU entry

There are 4 chains in PDB entry 1TMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 1ILE 14
H
 ILE 16PHE 245
J
 ASP 55GLU 62
J
 LEU 64GLN 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 1TMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AH1
L
4 11Right-handed alpha
Helix 2
AH2
L
14 14Right-handed alpha
Helix 3
BH1
H
125 130Right-handed alpha
Helix 4
BH2
H
164 171Right-handed alpha
Helix 5
BH3
H
234 245Right-handed alpha
Helix 6
HH1
J
60 64Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1TMU. Click on sheet of interest to get list of strands forming it: BS1, BS2,

There are 7 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 36first strand
Strand 2
H
39 47anti-parallel
Strand 3
H
50 54anti-parallel
Strand 4
H
103 109anti-parallel
Strand 5
H
81 91anti-parallel
Strand 6
H
63 68anti-parallel
Strand 7
H
29 36anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 163first strand
Strand 2
H
179 184anti-parallel
Strand 3
H
226 231anti-parallel
Strand 4
H
204 215anti-parallel
Strand 5
H
196 203anti-parallel
Strand 6
H
133 140anti-parallel
Strand 7
H
155 163anti-parallel
Strand 8
H
20 22anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il