Analysis of interatomic Contacts of Structural Units in PDB entry:
1TNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1TNB entry

There are 18 chains in PDB entry 1TNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 55	SER 368
B	LEU 18	THR 363
C	PHE 55	SER 368
D	LEU 18	THR 363
E	PHE 55	SER 368
F	LEU 18	THR 363
G	PHE 55	SER 368
H	LEU 18	THR 363
I	PHE 55	SER 368
J	LEU 18	THR 363
K	PHE 55	SER 368
L	LEU 18	THR 363
M	LYS 6	PHE 10
N	LYS 6	PHE 10
O	LYS 6	PHE 10
P	LYS 6	PHE 10
Q	LYS 6	PHE 10
R	LYS 6	PHE 10

There are222 helices in PDB entry 1TNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	73	Right-handed 310
Helix 2	2	A	93	109	Right-handed alpha
Helix 3	3	A	113	127	Right-handed alpha
Helix 4	4	A	130	144	Right-handed alpha
Helix 5	5	A	147	162	Right-handed alpha
Helix 6	6	A	165	180	Right-handed alpha
Helix 7	7	A	184	196	Right-handed alpha
Helix 8	8	A	199	213	Right-handed alpha
Helix 9	9	A	218	230	Right-handed alpha
Helix 10	10	A	233	246	Right-handed alpha
Helix 11	11	A	252	270	Right-handed alpha
Helix 12	12	A	273	286	Right-handed alpha
Helix 13	13	A	288	291	Right-handed 310
Helix 14	14	A	292	307	Right-handed alpha
Helix 15	15	A	308	325	Right-handed alpha
Helix 16	16	A	329	347	Right-handed alpha
Helix 17	17	A	349	351	Right-handed 310
Helix 18	18	A	352	365	Right-handed alpha
Helix 19	19	B	21	34	Right-handed alpha
Helix 20	20	B	37	45	Right-handed 310
Helix 21	21	B	46	61	Right-handed alpha
Helix 22	22	B	63	67	Right-handed 310
Helix 23	23	B	68	78	Right-handed alpha
Helix 24	24	B	89	93	Right-handed 310
Helix 25	25	B	121	135	Right-handed alpha
Helix 26	26	B	143	155	Right-handed alpha
Helix 27	27	B	171	185	Right-handed alpha
Helix 28	28	B	187	191	Right-handed 310
Helix 29	29	B	192	203	Right-handed alpha
Helix 30	30	B	219	234	Right-handed alpha
Helix 31	31	B	235	240	Right-handed alpha
Helix 32	32	B	241	254	Right-handed alpha
Helix 33	33	B	271	283	Right-handed alpha
Helix 34	34	B	285	289	Right-handed 310
Helix 35	35	B	290	301	Right-handed alpha
Helix 36	36	B	318	332	Right-handed alpha
Helix 37	37	B	348	362	Right-handed alpha
Helix 38	38	C	65	73	Right-handed 310
Helix 39	39	C	93	109	Right-handed alpha
Helix 40	40	C	113	127	Right-handed alpha
Helix 41	41	C	130	144	Right-handed alpha
Helix 42	42	C	147	162	Right-handed alpha
Helix 43	43	C	165	180	Right-handed alpha
Helix 44	44	C	184	196	Right-handed alpha
Helix 45	45	C	199	213	Right-handed alpha
Helix 46	46	C	218	230	Right-handed alpha
Helix 47	47	C	233	246	Right-handed alpha
Helix 48	48	C	252	270	Right-handed alpha
Helix 49	49	C	273	286	Right-handed alpha
Helix 50	50	C	288	291	Right-handed 310
Helix 51	51	C	292	307	Right-handed alpha
Helix 52	52	C	308	325	Right-handed alpha
Helix 53	53	C	329	347	Right-handed alpha
Helix 54	54	C	349	351	Right-handed 310
Helix 55	55	C	352	365	Right-handed alpha
Helix 56	56	D	21	34	Right-handed alpha
Helix 57	57	D	37	45	Right-handed 310
Helix 58	58	D	46	61	Right-handed alpha
Helix 59	59	D	63	67	Right-handed 310
Helix 60	60	D	68	78	Right-handed alpha
Helix 61	61	D	89	93	Right-handed 310
Helix 62	62	D	121	135	Right-handed alpha
Helix 63	63	D	143	155	Right-handed alpha
Helix 64	64	D	171	185	Right-handed alpha
Helix 65	65	D	187	191	Right-handed 310
Helix 66	66	D	192	203	Right-handed alpha
Helix 67	67	D	219	234	Right-handed alpha
Helix 68	68	D	235	240	Right-handed alpha
Helix 69	69	D	241	254	Right-handed alpha
Helix 70	70	D	271	283	Right-handed alpha
Helix 71	71	D	285	289	Right-handed 310
Helix 72	72	D	290	301	Right-handed alpha
Helix 73	73	D	318	332	Right-handed alpha
Helix 74	74	D	348	363	Right-handed alpha
Helix 75	75	E	65	73	Right-handed 310
Helix 76	76	E	93	109	Right-handed alpha
Helix 77	77	E	113	127	Right-handed alpha
Helix 78	78	E	130	144	Right-handed alpha
Helix 79	79	E	147	162	Right-handed alpha
Helix 80	80	E	165	180	Right-handed alpha
Helix 81	81	E	184	196	Right-handed alpha
Helix 82	82	E	199	213	Right-handed alpha
Helix 83	83	E	218	230	Right-handed alpha
Helix 84	84	E	233	246	Right-handed alpha
Helix 85	85	E	252	270	Right-handed alpha
Helix 86	86	E	273	286	Right-handed alpha
Helix 87	87	E	288	291	Right-handed 310
Helix 88	88	E	292	307	Right-handed alpha
Helix 89	89	E	308	325	Right-handed alpha
Helix 90	90	E	329	347	Right-handed alpha
Helix 91	91	E	349	351	Right-handed 310
Helix 92	92	E	352	365	Right-handed alpha
Helix 93	93	F	21	34	Right-handed alpha
Helix 94	94	F	37	45	Right-handed 310
Helix 95	95	F	46	61	Right-handed alpha
Helix 96	96	F	63	67	Right-handed 310
Helix 97	97	F	68	78	Right-handed alpha
Helix 98	98	F	89	93	Right-handed 310
Helix 99	99	F	121	135	Right-handed alpha
Helix 100	100	F	143	155	Right-handed alpha
Helix 101	101	F	171	185	Right-handed alpha
Helix 102	102	F	187	191	Right-handed 310
Helix 103	103	F	192	203	Right-handed alpha
Helix 104	104	F	219	234	Right-handed alpha
Helix 105	105	F	235	240	Right-handed alpha
Helix 106	106	F	241	254	Right-handed alpha
Helix 107	107	F	271	283	Right-handed alpha
Helix 108	108	F	285	289	Right-handed 310
Helix 109	109	F	290	301	Right-handed alpha
Helix 110	110	F	318	332	Right-handed alpha
Helix 111	111	F	348	362	Right-handed alpha
Helix 112	112	G	65	73	Right-handed 310
Helix 113	113	G	93	109	Right-handed alpha
Helix 114	114	G	113	127	Right-handed alpha
Helix 115	115	G	130	144	Right-handed alpha
Helix 116	116	G	147	162	Right-handed alpha
Helix 117	117	G	165	180	Right-handed alpha
Helix 118	118	G	184	196	Right-handed alpha
Helix 119	119	G	199	213	Right-handed alpha
Helix 120	120	G	218	230	Right-handed alpha
Helix 121	121	G	233	246	Right-handed alpha
Helix 122	122	G	252	270	Right-handed alpha
Helix 123	123	G	273	286	Right-handed alpha
Helix 124	124	G	288	291	Right-handed 310
Helix 125	125	G	292	307	Right-handed alpha
Helix 126	126	G	308	325	Right-handed alpha
Helix 127	127	G	329	347	Right-handed alpha
Helix 128	128	G	349	351	Right-handed 310
Helix 129	129	G	352	365	Right-handed alpha
Helix 130	130	H	21	34	Right-handed alpha
Helix 131	131	H	37	45	Right-handed 310
Helix 132	132	H	46	61	Right-handed alpha
Helix 133	133	H	63	67	Right-handed 310
Helix 134	134	H	68	78	Right-handed alpha
Helix 135	135	H	89	93	Right-handed 310
Helix 136	136	H	121	135	Right-handed alpha
Helix 137	137	H	143	155	Right-handed alpha
Helix 138	138	H	171	185	Right-handed alpha
Helix 139	139	H	187	191	Right-handed 310
Helix 140	140	H	192	203	Right-handed alpha
Helix 141	141	H	219	234	Right-handed alpha
Helix 142	142	H	235	240	Right-handed alpha
Helix 143	143	H	241	254	Right-handed alpha
Helix 144	144	H	271	283	Right-handed alpha
Helix 145	145	H	285	289	Right-handed 310
Helix 146	146	H	290	301	Right-handed alpha
Helix 147	147	H	318	333	Right-handed alpha
Helix 148	148	H	348	362	Right-handed alpha
Helix 149	149	I	65	73	Right-handed 310
Helix 150	150	I	93	109	Right-handed alpha
Helix 151	151	I	113	127	Right-handed alpha
Helix 152	152	I	130	144	Right-handed alpha
Helix 153	153	I	147	162	Right-handed alpha
Helix 154	154	I	165	180	Right-handed alpha
Helix 155	155	I	184	196	Right-handed alpha
Helix 156	156	I	199	213	Right-handed alpha
Helix 157	157	I	218	230	Right-handed alpha
Helix 158	158	I	233	246	Right-handed alpha
Helix 159	159	I	252	270	Right-handed alpha
Helix 160	160	I	273	286	Right-handed alpha
Helix 161	161	I	288	291	Right-handed 310
Helix 162	162	I	292	303	Right-handed alpha
Helix 163	163	I	308	325	Right-handed alpha
Helix 164	164	I	329	347	Right-handed alpha
Helix 165	165	I	349	351	Right-handed 310
Helix 166	166	I	352	365	Right-handed alpha
Helix 167	167	J	21	34	Right-handed alpha
Helix 168	168	J	37	45	Right-handed 310
Helix 169	169	J	46	61	Right-handed alpha
Helix 170	170	J	62	67	Right-handed 310
Helix 171	171	J	68	78	Right-handed alpha
Helix 172	172	J	89	93	Right-handed 310
Helix 173	173	J	121	135	Right-handed alpha
Helix 174	174	J	143	155	Right-handed alpha
Helix 175	175	J	171	185	Right-handed alpha
Helix 176	176	J	187	191	Right-handed 310
Helix 177	177	J	192	203	Right-handed alpha
Helix 178	178	J	219	234	Right-handed alpha
Helix 179	179	J	235	240	Right-handed alpha
Helix 180	180	J	241	254	Right-handed alpha
Helix 181	181	J	271	283	Right-handed alpha
Helix 182	182	J	285	289	Right-handed 310
Helix 183	183	J	290	301	Right-handed alpha
Helix 184	184	J	318	332	Right-handed alpha
Helix 185	185	J	348	363	Right-handed alpha
Helix 186	186	K	65	73	Right-handed 310
Helix 187	187	K	93	109	Right-handed alpha
Helix 188	188	K	113	127	Right-handed alpha
Helix 189	189	K	130	144	Right-handed alpha
Helix 190	190	K	147	162	Right-handed alpha
Helix 191	191	K	165	180	Right-handed alpha
Helix 192	192	K	184	196	Right-handed alpha
Helix 193	193	K	199	213	Right-handed alpha
Helix 194	194	K	218	230	Right-handed alpha
Helix 195	195	K	233	246	Right-handed alpha
Helix 196	196	K	252	270	Right-handed alpha
Helix 197	197	K	273	286	Right-handed alpha
Helix 198	198	K	288	291	Right-handed 310
Helix 199	199	K	292	307	Right-handed alpha
Helix 200	200	K	308	325	Right-handed alpha
Helix 201	201	K	329	347	Right-handed alpha
Helix 202	202	K	349	351	Right-handed 310
Helix 203	203	K	352	365	Right-handed alpha
Helix 204	204	L	21	34	Right-handed alpha
Helix 205	205	L	37	45	Right-handed 310
Helix 206	206	L	46	61	Right-handed alpha
Helix 207	207	L	63	67	Right-handed 310
Helix 208	208	L	68	78	Right-handed alpha
Helix 209	209	L	89	93	Right-handed 310
Helix 210	210	L	121	135	Right-handed alpha
Helix 211	211	L	143	155	Right-handed alpha
Helix 212	212	L	171	185	Right-handed alpha
Helix 213	213	L	187	191	Right-handed 310
Helix 214	214	L	192	203	Right-handed alpha
Helix 215	215	L	219	234	Right-handed alpha
Helix 216	216	L	235	240	Right-handed alpha
Helix 217	217	L	241	254	Right-handed alpha
Helix 218	218	L	271	283	Right-handed alpha
Helix 219	219	L	285	289	Right-handed 310
Helix 220	220	L	290	301	Right-handed alpha
Helix 221	221	L	318	332	Right-handed alpha
Helix 222	222	L	348	362	Right-handed alpha

There are 18 sheets in PDB entry 1TNB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	B	35	36	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	94	95	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	D	35	36	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	94	95	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	F	35	36	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	94	95	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	341	first strand
Strand 2	F	346	347	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	90	first strand
Strand 2	H	35	36	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	81	first strand
Strand 2	H	94	95	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	340	341	first strand
Strand 2	H	346	347	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	89	90	first strand
Strand 2	J	35	36	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	81	first strand
Strand 2	J	94	95	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	340	341	first strand
Strand 2	J	346	347	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	89	90	first strand
Strand 2	L	35	36	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	80	81	first strand
Strand 2	L	94	95	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	340	341	first strand
Strand 2	L	346	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1TNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
1TNB