Analysis of interatomic Contacts of Structural Units in PDB entry:
1TNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TNX entry

There is 1 chain in PDB entry 1TNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 5MET 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 1TNX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
N
A
6 13Right-handed alpha
Helix 2
A
A
16 29Right-handed alpha
Helix 3
B
A
39 48Right-handed alpha
Helix 4
C
A
55 65Right-handed alpha
Helix 5
D
A
75 84Right-handed alpha
Helix 6
E
A
96 105Right-handed alpha
Helix 7
F
A
115 124Right-handed alpha
Helix 8
G
A
131 141Right-handed alpha
Helix 9
H
A
151 157Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1TNX. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 38first strand
Strand 2
A
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 114first strand
Strand 2
A
148 150anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il