Analysis of interatomic Contacts of Structural Units in PDB entry:
1TO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TO6 entry

There are 2 chains in PDB entry 1TO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 371
B
 MET 1ILE 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1TO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 31Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
88 93Right-handed alpha
Helix 4
4
A
94 97Right-handed 310
Helix 5
5
A
109 122Right-handed alpha
Helix 6
6
A
140 146Right-handed alpha
Helix 7
7
A
162 168Right-handed 310
Helix 8
8
A
201 207Right-handed alpha
Helix 9
9
A
208 211Right-handed 310
Helix 10
10
A
213 215Right-handed 310
Helix 11
11
A
216 232Right-handed alpha
Helix 12
12
A
233 238Right-handed 310
Helix 13
13
A
246 255Right-handed alpha
Helix 14
14
A
262 270Right-handed alpha
Helix 15
15
A
271 276Right-handed alpha
Helix 16
16
A
297 304Right-handed alpha
Helix 17
17
A
343 368Right-handed alpha
Helix 18
18
B
15 31Right-handed alpha
Helix 19
19
B
47 54Right-handed alpha
Helix 20
20
B
88 93Right-handed alpha
Helix 21
21
B
94 97Right-handed 310
Helix 22
22
B
98 102Right-handed 310
Helix 23
23
B
109 122Right-handed alpha
Helix 24
24
B
140 146Right-handed alpha
Helix 25
25
B
162 169Right-handed 310
Helix 26
26
B
201 207Right-handed alpha
Helix 27
27
B
213 232Right-handed alpha
Helix 28
28
B
233 238Right-handed 310
Helix 29
29
B
242 245Right-handed 310
Helix 30
30
B
246 255Right-handed alpha
Helix 31
31
B
262 270Right-handed alpha
Helix 32
32
B
271 276Right-handed alpha
Helix 33
33
B
297 305Right-handed alpha
Helix 34
34
B
343 368Right-handed alpha
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There are 8 sheets in PDB entry 1TO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
2 5parallel
Strand 3
A
281 284parallel
Strand 4
A
312 316parallel
Strand 5
A
331 336parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 66first strand
Strand 2
A
72 79anti-parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
126 130parallel
Strand 5
A
185 190parallel
Strand 6
A
258 261parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
171 173anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
318 319parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
2 5parallel
Strand 3
B
281 284parallel
Strand 4
B
312 316parallel
Strand 5
B
331 336parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 66first strand
Strand 2
B
72 80anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
126 130parallel
Strand 5
B
185 190parallel
Strand 6
B
258 261parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
171 173anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
318 319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il